de6c27b63c74c93c069030f93a2817b93bf71b8e angie Tue Mar 10 15:49:39 2026 -0700 Update lorax track iframeUrl to point to new lorax.ucsc.edu server diff --git src/hg/makeDb/trackDb/human/hg38/tgpArchive.ra src/hg/makeDb/trackDb/human/hg38/tgpArchive.ra index 4870ddbef1e..555a067324f 100644 --- src/hg/makeDb/trackDb/human/hg38/tgpArchive.ra +++ src/hg/makeDb/trackDb/human/hg38/tgpArchive.ra @@ -1,111 +1,111 @@ track tgpArchive superTrack on shortLabel 1000 Genomes longLabel 1000 Genomes Phase 3 cartVersion 2 visibility hide group varRep html ../tgpArchive track tgpPhase3 parent tgpArchive shortLabel 1000G Ph3 Vars longLabel 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels type vcfTabix visibility hide maxWindowToDraw 5000000 showHardyWeinberg on geneTrack ncbiRefSeqCurated chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX html tgpPhase3 track tgpLorax parent tgpArchive release alpha shortLabel 1000 Genomes Lorax longLabel 1000 Genomes Ancestral Recombination Graph subtree regions with link to Lorax viewer type lorax visibility hide maxWindowToDraw 5000000 bigDataUrl /gbdb/hg38/bbi/tgpLorax.bb - iframeUrl https://host.docker.internal:5173?chrom=$S&genomiccoordstart=$[&genomiccoordend=$]®ionstart=${®ionend=$} + iframeUrl https://lorax.ucsc.edu/ucgb?chrom=$S&genomiccoordstart=$[&genomiccoordend=$]®ionstart=${®ionend=$} iframeOptions width='100%' height='550px' border='none' track tgpTrios parent tgpArchive type vcfPhasedTrio chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX maxWindowToDraw 5000000 shortLabel 1000 Genomes Trios longLabel Thousand Genomes Project Family VCF Trios vcfUseAltSampleNames on vcfDoFilter off vcfDoQual off vcfDoMaf off compositeTrack on geneTrack ncbiRefSeqCurated visibility pack html tgpTrios track tgpNA19685_m011_MXL parent tgpTrios type vcfPhasedTrio shortLabel m011 MXL Trio longLabel 1000 Genomes m011 Mexican Ancestry from Los Angeles Trio vcfChildSample NA19685|child vcfParentSamples NA19660|mother,NA19661|father visibility full track tgpNA19675_m004_MXL parent tgpTrios type vcfPhasedTrio shortLabel m004 MXL Trio longLabel 1000 Genomes m004 Mexican Ancestry from Los Angeles Trio vcfChildSample NA19675|child vcfParentSamples NA19678|mother,NA19679|father visibility full track tgpNA19240_Y117_YRI parent tgpTrios type vcfPhasedTrio shortLabel Y117 YRI Trio longLabel 1000 Genomes Yoruban in Ibadan, Nigeria Trio vcfChildSample NA19240|child vcfParentSamples NA19238|mother,NA19239|father visibility full track tgpNA12878_1463_CEU parent tgpTrios type vcfPhasedTrio shortLabel 1463 CEU Trio longLabel 1000 Genomes Utah CEPH Trio vcfChildSample NA12878|child vcfParentSamples NA12892|mother,NA12891|father visibility full track tgpHG02024_VN049_KHV parent tgpTrios type vcfPhasedTrio shortLabel VN049 KHV Trio longLabel 1000 Genomes Kinh in Ho Chi Minh City, Vietnam Trio vcfChildSample HG02024|child vcfParentSamples HG02025|mother,HG02026|father visibility full track tgpHG00733_PR05_PUR parent tgpTrios type vcfPhasedTrio shortLabel PR05 PUR Trio longLabel 1000 Genomes Puerto Ricans from Puerto Rico Trio vcfChildSample HG00733|child vcfParentSamples HG00732|mother,HG00731|father visibility full track tgpHG00702_SH089_CHS parent tgpTrios type vcfPhasedTrio shortLabel SH089 CHS Trio longLabel 1000 Genomes Southern Han Chinese Trio vcfChildSample HG00702|child vcfParentSamples HG00657|mother,HG00656|father visibility full