51dfe6b3d4acfb1caafbee15bfdba3ea1f18fd43 braney Mon Jun 30 15:55:01 2025 -0700 ongoing work on liftOver diff --git src/hg/lib/hubConnect.c src/hg/lib/hubConnect.c index 12c491c9c46..3cc2146ddc9 100644 --- src/hg/lib/hubConnect.c +++ src/hg/lib/hubConnect.c @@ -490,43 +490,44 @@ for(tdb = tdbList; tdb; tdb = tdb->next) { assignQuickLift(tdb->subtracks, quickLiftChain, db); hashAdd(tdb->settingsHash, "quickLiftUrl", quickLiftChain); hashAdd(tdb->settingsHash, "quickLiftDb", db); } } // a string to define trackDb for quickLift chain static char *chainTdbString = "shortLabel chain to %s\n" "longLabel chain to %s\n" "type bigChain %s\n" "chainType reverse\n" - "bigDataUrl %s\n"; + "bigDataUrl %s\n" + "quickLiftUrl %s\n"; static struct trackDb *makeQuickLiftChainTdb(struct trackHubGenome *hubGenome, struct hubConnectStatus *hub) // make a trackDb entry for a quickLift chain { struct trackDb *tdb; AllocVar(tdb); char buffer[4096]; safef(buffer, sizeof buffer, "hub_%d_quickLiftChain", hub->id); tdb->table = tdb->track = cloneString(buffer); -safef(buffer, sizeof buffer, chainTdbString, hubGenome->quickLiftDb, hubGenome->quickLiftDb, hubGenome->quickLiftDb, hubGenome->quickLiftChain); +safef(buffer, sizeof buffer, chainTdbString, hubGenome->quickLiftDb, hubGenome->quickLiftDb, hubGenome->quickLiftDb, hubGenome->quickLiftChain, hubGenome->quickLiftChain); tdb->settings = cloneString(buffer); tdb->settingsHash = trackDbSettingsFromString(tdb, buffer); trackDbFieldsFromSettings(tdb); tdb->visibility = tvDense; return tdb; } static struct trackDb *fixForQuickLift(struct trackDb *tdbList, struct trackHubGenome *hubGenome, struct hubConnectStatus *hub) // assign a quickLift chain to the tdbList and make a trackDb entry for the chain. { assignQuickLift(tdbList, hubGenome->quickLiftChain, hub->trackHub->defaultDb); struct trackDb *quickLiftTdb = makeQuickLiftChainTdb(hubGenome, hub); quickLiftTdb->grp = tdbList->grp;