58fa228f2f91ae8c6a5c62109e904f57e1f9a66d braney Wed Sep 30 11:03:02 2026 -0700 docent regression scripts for nineteen v504 tickets, and their registry rows Each script watches one v504 fix. Fourteen fail on v503 (ts park 38316) and pass on genome-test (release-ab). rm38313 and rm38393 are sandbox-ab, because no release predates their fix. rm37984, rm38233 and rm38384 are assertion-only; each header says why. The registry now names the script in the docent column for these tickets, and has new rows for #38157 and #38393. #38275 stays unwatched in the table: the script that watches it is rm37389, which is named for another ticket. refs #20824, #27988, #36292, #37595, #37621, #37929, #37984, #38157, #38192, #38197, #38233, #38254, #38264, #38273, #38313, #38323, #38372, #38384, #38393, #38252, #38391 Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> diff --git src/hg/utils/docent/tests/regress/rm20824.docent.yaml src/hg/utils/docent/tests/regress/rm20824.docent.yaml new file mode 100644 index 00000000000..4f3ba5c7614 --- /dev/null +++ src/hg/utils/docent/tests/regress/rm20824.docent.yaml @@ -0,0 +1,63 @@ +# #20824 -- a bigNet track type for hubs: the netAlign data in a bigBed, so a hub can carry +# a real alignment net instead of a mafNet stand-in. +# +# Commits: 353a34ac7e7 (the type), f29b65452a1 (quickLift of it), 357d4dbeca6 (review +# fixes), d11a21c48cd (the hg.conf gate), b18f2f9facb, 8449e4fa9d0 (a type line naming a +# chain track the assembly lacks), f19df2f8365 (hgc: the chain and net details pages built +# with htmlPrintf), 964cacf58de (the trackDb doc blurb). None of them is in v503. +# +# HG.CONF GATE: `bigNet=on`. Off by default. With it off, the net row is drawn as the +# yellow "Unsupported type" bar and every check below goes red, which is a configuration +# answer and not a regression. Settle it with +# grep -n '^bigNet' /usr/local/apache/cgi-bin/hg.conf (genome-test) +# genome-test and every ticket park (they include genome-test's hg.conf) have it on, and +# so did hgwbeta on 2026-09-30, where this script passed. ~/kent/confs/hgwbeta.hg.conf +# does not carry the line, so that copy is not the one to read for beta. #20824 says +# the line is added to the RR hg.conf with the v504 CGI release. +# +# The fixture is ~braney/docentFixtures/rm20824, a copy of the demo hub posted on the ticket: +# hg38 chr22 against mm39, the same rows as the native chainMm39 and netMm39. Its tracks +# carry the rm20824 prefix so that no native row can stand in for them. +# +# What is asserted: +# * the net row DRAWS ITS ITEMS. The row exists on a build without the type too -- it is +# the warning bar -- so rows: alone is blind; the color check says the row is not +# 240,240,180 (undefinedYellowColor), the bar rm38310 also reads. +# * the row carries item map boxes, which the warning bar has none of. +# * the details page of the top-level fill prints the net's own fields, with the exact +# values the native netMm39 row gives for the same fill: its span on each side, the +# chain id, and the aligning-base count. A page that aborted early carries the +# track's label in its header, so the label is not what is asserted. +# +# NOT asserted: quickLift of a bigNet (it needs a convert: and the lifted details page says +# it has no chain to follow, #38249), and the XSS escaping in f19df2f8365, which changes no +# byte of a page built from well-formed data. +proof: + - "assertion-only 2026-09-30 -- written from #20824 and the demo hub after the type reached genome-test" + - "release-ab 2026-09-30 -- passes on genome-test, hgwbeta (v504) and ts park 38423 (v504_branch); fails on ts park 38316 (v503_branch, same hg.conf with bigNet=on) at step 4: no rm20824Net item box, and the row is drawn 240,240,180 (72%), the Unsupported type bar" + +target: genome-test +db: hg38 +position: chr22:17500000-17510000 +reset: true +fast: true +steps: + - go: chr22:17500000-17510000 + - hide: all + - hub: {url: "https://hgwdev.gi.ucsc.edu/~braney/docentFixtures/rm20824/hub.txt", db: hg38, position: "chr22:17500000-17510000"} + - expect: + rows: [rm20824Chain, rm20824Net] + has: 'area[href*="rm20824Net"][href*="i=1"]' + noText: "Unsupported type" + color: + - {track: rm20824Net, not: "240,240,180"} + + # The top-level fill under this window: chr22 against mouse chr6, chain 287. Named by its + # tooltip, since every fill's box is titled with its level ("1") and a bare "1" is also a + # substring of every href on the page. + - click: {track: rm20824Net, title: "chr6 + 120440k"} + - expect: + url: "hgc" + text: ["Human position:", "chr22:17084921-18177998", "Mouse position:", + "chr6:120440121-121250251", "Chain ID:", "287", "257,389"] + noText: ["Missing field in bigNet", "Unsupported type"]