eb4042bf96a8a37ea613e7c0860c6a49d210bc24 braney Wed Sep 23 09:38:32 2026 -0700 hgConfCatalog: rebuild the age cache at v504, refs #37925 Built at v503, so gates added since had no date. Rebuilt with harvestHgConf.py --age --refresh after v504_branch was cut. diff --git src/hg/utils/hgConfCatalog/hgConfAges.json src/hg/utils/hgConfCatalog/hgConfAges.json index 409fc3c2918..61eb453c70e 100644 --- src/hg/utils/hgConfCatalog/hgConfAges.json +++ src/hg/utils/hgConfCatalog/hgConfAges.json @@ -1,42 +1,52 @@ { - "current": 503, + "current": 504, "first": { + "(not set, defaults on)": { + "commit": "a0a3411bca2", + "subject": "bedItemRgbTester: pin the order of the itemRgb and color tests", + "tickets": [ + 36212, + 38391 + ], + "ts": 1789867176, + "version": 504, + "via": "call" + }, "../cgi-bin/RNAplot": { "commit": "a127c65d3af", "subject": "Fixing RNAplot problem with newer versions, refs #11957, note 178 and", "tickets": [ 6382, 11957 ], "ts": 1394017544, "version": 297, "via": "call" }, "../goldenPath/help/query.html": { "commit": "33db6013f1b", "subject": "removing the hg.conf dependency and changing \"examples\" help text to Jim's suggested text, refs #28072", "tickets": [ 28072 ], "ts": 1633958818, "version": 422, "via": "call" }, "../goldenPath/newsarch.html": { "commit": "a9c71c94309", - "released": false, "subject": "BLAT dated banner: make the news announcement URL an hg.conf setting. refs #37996", "tickets": [ 37996 ], "ts": 1788559098, "version": 504, "via": "call" }, "../htdocs/urw-fonts": { "commit": "e68383a5913", "subject": "turn freeType fonts on by default. Look for them in ../htdocs/urw-fonts", "tickets": [], "ts": 1617745525, "version": 413, "via": "call" @@ -564,31 +574,30 @@ "version": 460, "via": "literal" }, "bigBedOnePath": { "commit": "ff70fc9c934", "subject": "one path for bigBed, bigPs, bigGenePred, bigDbSNp. refs #19984", "tickets": [ 19984 ], "ts": 1762212019, "version": 490, "via": "call" }, "bigNet": { "commit": "d11a21c48cd", - "released": false, "subject": "bigNet: gate the track type behind an hg.conf flag, refs #20824", "tickets": [ 20824 ], "ts": 1788787783, "version": 504, "via": "call" }, "bigWarn": { "commit": "61e3dea584f", "subject": "make sure bigWarn statements end up in the log.", "tickets": [], "ts": 1538093483, "version": 372, "via": "literal" @@ -603,71 +612,68 @@ "version": 503, "via": "call" }, "blatNewFormBanner": { "commit": "cee097b75fe", "subject": "hgBlat: new client-rendered BLAT search form and sortable results page, refs #37893", "tickets": [ 37893 ], "ts": 1786461522, "version": 503, "via": "call" }, "blatNewFormNewsUrl": { "commit": "a9c71c94309", - "released": false, "subject": "BLAT dated banner: make the news announcement URL an hg.conf setting. refs #37996", "tickets": [ 37996 ], "ts": 1788559098, "version": 504, "via": "literal" }, "blatNewFormSwitchDate": { "commit": "7a69a5535f1", - "released": false, "subject": "BLAT classic form: announce the new-page switch date via hg.conf, fix stale input limits. refs #37996", "tickets": [ 37996 ], "ts": 1788558250, "version": 504, "via": "call" }, "blatNewPageBanner": { "commit": "c683ecb63d7", "subject": "hgBlat/hgc: single-page BLAT results view with shareable alignment links", "tickets": [], "ts": 1785029100, "version": 502, "via": "call" }, "blatOldTracks": { "commit": "81d7cff6cb6", "subject": "hgBlat new results page: table redesign, rename modal, share link, and an XSS fix", "tickets": [ 37893 ], "ts": 1786029878, "version": 502, "via": "literal" }, "blatOnlyLatestCheckbox": { "commit": "994528edb7d", - "released": false, "subject": "Adding an opt-in \"Keep only last search\" checkbox to the new BLAT search form. refs #36292", "tickets": [ 36292 ], "ts": 1788554116, "version": 504, "via": "literal" }, "blatResultsGroup": { "commit": "f48fc325d72", "subject": "BLAT results: own track group, Delete-all button, clearer names, refs #38086", "tickets": [ 38086 ], "ts": 1786977282, @@ -842,31 +848,30 @@ ], "ts": 1772565923, "version": 495, "via": "call" }, "browser.quickLift": { "commit": "6823728f163", "subject": "ongoing work on quickLift. Added support for SQL beds", "tickets": [], "ts": 1739736793, "version": 478, "via": "call" }, "browser.quickLiftAlignments": { "commit": "992aeef92fe", - "released": false, "subject": "quickLift: gate the alignment lift behind an hg.conf flag, refs #38249", "tickets": [ 38249 ], "ts": 1788805867, "version": 504, "via": "call" }, "browser.recTrackSets": { "commit": "bd6e3996c72", "subject": "Add hg.conf var to enable Recommended Track Sets. Remove hgSession URL mod, in favor of hgTracks detecting non-Track-Se", "tickets": [ 25601 ], "ts": 1597276217, @@ -969,31 +974,30 @@ "tickets": [], "ts": 1668556121, "version": 440, "via": "call" }, "canSnake": { "commit": "693a69d6c9b", "subject": "add option to show chains as snakes under hg.conf control", "tickets": [], "ts": 1675293513, "version": 444, "via": "call" }, "captchaDebug": { "commit": "5abe782bada", - "released": false, "subject": "cart.c: gate the captcha session-id debug print behind hg.conf captchaDebug, refs #38247", "tickets": [ 38247 ], "ts": 1788538366, "version": 504, "via": "call" }, "cart.db": { "commit": "77c72446123", "subject": "allow cart to be configured on a seperate server", "tickets": [], "ts": 1075367860, "version": 49, "via": "call" @@ -1140,31 +1144,30 @@ "version": 483, "via": "call" }, "cloudFlareSiteKey": { "commit": "27370697e01", "subject": "adding cloudflare bot protection, refs #35790", "tickets": [ 35790 ], "ts": 1748382665, "version": 483, "via": "literal" }, "collectionHubCopyOnWrite": { "commit": "59e2bbf2d3a", - "released": false, "subject": "Copy a track collection's hub file when the program that writes it asks for a copy, instead of on every session load.", "tickets": [ 38273 ], "ts": 1788884462, "version": 504, "via": "call" }, "cramRef": { "commit": "173bacbf6c2", "subject": "some tweaks to CRAM support #14717", "tickets": [ 14717 ], "ts": 1450125196, @@ -1389,30 +1392,40 @@ "commit": "c4fe426d093", "subject": "allow using different names for the following tables: dbDb, defaultDb,", "tickets": [], "ts": 1426458132, "version": 314, "via": "literal" }, "defaultGenome": { "commit": "eef8a09acca", "subject": "find defaultGenome from hg.conf if present", "tickets": [], "ts": 1267825341, "version": 226, "via": "call" }, + "denseClick": { + "commit": "4d36c5c0a9c", + "subject": "hgTracks: a dense row can have one clickable map box per item, refs #38364", + "tickets": [ + 38364 + ], + "ts": 1789583940, + "version": 504, + "via": "call" + }, "detectMysqlLoadWarnings": { "commit": "73df2d32a41", "subject": "mysql load data file warnings abort - adding some caution about changing stuff, so for now warning detection activates o", "tickets": [], "ts": 1332788999, "version": 265, "via": "call" }, "doHgcInPopUp": { "commit": "3d3f084876b", "subject": "Show hgc details pages in a dialog on hgTracks. Currently under hg.conf", "tickets": [ 33216 ], "ts": 1710372599, @@ -1776,30 +1789,41 @@ ], "ts": 1396052803, "version": 298, "via": "call" }, "hgGateway.dbDbTaxonomy": { "commit": "915f56e3f34", "subject": "Simplify the generation of hgGateway's dbDbTaxonomy tree info and support mirrors better: new hg.conf setting hgGateway.", "tickets": [ 15277 ], "ts": 1461098208, "version": 332, "via": "call" }, + "hgGateway.showRefBadge": { + "commit": "81a04805893", + "released": false, + "subject": "highlight NCBI \"reference\" assemblies in the search result and hg.conf gated with hgGateway.showRefBadge=on default is o", + "tickets": [ + 38401 + ], + "ts": 1790033310, + "version": 505, + "via": "call" + }, "hgHubConnect.cacheDir": { "commit": "a5cd114e4b6", "subject": "hgHubConnect needed to support an hg.conf-specified cache directory for search, refs #13625", "tickets": [ 13625 ], "ts": 1497566680, "version": 351, "via": "call" }, "hgHubConnect.validateHub": { "commit": "77dde8a8310", "subject": "First pass on validate hub tab for hgHubConnect, currently hg.conf controlled. Work in progress still, refs #18870", "tickets": [ 18870 @@ -2383,38 +2407,38 @@ "ts": 1340388788, "version": 269, "via": "literal" }, "login.browserName": { "commit": "e61c0b17e8c", "subject": "Bug #8250 Replace hard coded 'UCSC Genome Browser', signature and return address in GUI and mail text with value from hg", "tickets": [ 8250 ], "ts": 1340388788, "version": 269, "via": "literal" }, "login.cookieSalt": { - "commit": "e5c786377ce", - "subject": "Better cookies and validation for hgLogin: instead of sending gbMembers.idx as", + "commit": "14ecff07305", + "subject": "hgHubConnect: an api key made on one geo mirror now works on all of them, behind syncHubApiKeys", "tickets": [ - 17327 + 38323 ], - "ts": 1481563506, - "version": 343, - "via": "literal" + "ts": 1789747566, + "version": 504, + "via": "call" }, "login.emailLink": { "commit": "4b04bd017d7", "subject": "hgLogin: gate email-link sign-in and change-email behind login.emailLink (default off), refs #37929", "tickets": [ 37929, 37984 ], "ts": 1785837116, "version": 502, "via": "literal" }, "login.https": { "commit": "d81a994fc5b", "subject": "Added a new hg.conf setting, login.https, so that mirror sites can turn off https for hgLogin if they don't support http", @@ -2465,31 +2489,30 @@ "version": 502, "via": "call" }, "login.pwdEyeIcon": { "commit": "80bedbcf180", "subject": "add password reveal button to hgLogin form refs ##37921", "tickets": [ 37921 ], "ts": 1784918088, "version": 502, "via": "literal" }, "login.recovEmailChange": { "commit": "d33d0e1c191", - "released": false, "subject": "hgLogin: let users set or change their recovery email address, refs #38197", "tickets": [ 38197 ], "ts": 1788270969, "version": 504, "via": "literal" }, "login.relativeLink": { "commit": "0cbc15777c7", "subject": "CIRM: fixing a bug in hgLogin that appears only when using it through a", "tickets": [], "ts": 1494004030, "version": 349, "via": "call" @@ -2500,31 +2523,30 @@ "tickets": [], "ts": 1336170706, "version": 267, "via": "literal" }, "mafClickMafFrag": { "commit": "4d91bce1e02", "subject": "Gate new mafFrag MAF click display behind hg.conf mafClickMafFrag setting", "tickets": [], "ts": 1773191684, "version": 496, "via": "call" }, "mallocTopPad": { "commit": "d2a2afcd6c5", - "released": false, "subject": "hgTracks: let hg.conf set how big a step malloc takes, refs #38225", "tickets": [ 38094, 38225 ], "ts": 1788295054, "version": 504, "via": "call" }, "maxDisplayPixelWidth": { "commit": "77663f3ad7d", "subject": "allow hg.conf override of 5000 pixel wide limit refs #10411", "tickets": [ 10411 ], @@ -2852,31 +2874,30 @@ "tickets": [], "ts": 1169534292, "version": 151, "via": "call" }, "paypalServer": { "commit": "8e2a526fcee", "subject": "inital add of gsidMember cgi for managing GSID membership signup and paypal payments", "tickets": [], "ts": 1169534292, "version": 151, "via": "call" }, "pngTimingSampleRate": { "commit": "7007b23dcc1", - "released": false, "subject": "hgTracks: measure how long the track image takes to reach the reader, refs #38109", "tickets": [ 38109 ], "ts": 1787863674, "version": 504, "via": "literal" }, "pq.crossHost": { "commit": "f6a79b66b48", "subject": "dealing with move to hgofbeta", "tickets": [], "ts": 1237513847, "version": 203, "via": "call" @@ -3125,45 +3146,57 @@ "ts": 1548294122, "version": 380, "via": "call" }, "sessionDataDirOld": { "commit": "cc91854c275", "subject": "Adding hg.conf setting sessionDataDirOld so that isValidBigDataUrl won't complain about absolute paths of trashCleaner-s", "tickets": [ 22440 ], "ts": 1558553100, "version": 383, "via": "call" }, "sessionDbName": { - "commit": "1d8785d66ed", - "subject": "allow for different names for the sessionDb and userDb tables", - "tickets": [], - "ts": 1428523543, - "version": 315, - "via": "literal" + "commit": "c62c5810fff", + "subject": "pyLib: align the python bottleneck code with hg/lib/botDelay.c, refs #38369", + "tickets": [ + 38369 + ], + "ts": 1789652279, + "version": 504, + "via": "call" }, "sessionKey": { "commit": "4b5cd619507", "subject": "initial work on creating a random session key for greater securiy of cart data", "tickets": [], "ts": 1392064220, "version": 297, "via": "call" }, + "sessionLoadNotice": { + "commit": "3bcf86a0995", + "subject": "hgTracks: tell the user what a session load just did, refs #38157", + "tickets": [ + 38157 + ], + "ts": 1789740928, + "version": 504, + "via": "call" + }, "sessionNewPage": { "commit": "9f8d33c8b2b", "subject": "hgSession: new opt-in JavaScript \"My Sessions\" page; share gbModern.css with hgBlat. refs #38157", "tickets": [ 37996, 38157 ], "ts": 1787303142, "version": 503, "via": "call" }, "sessionNewPageBanner": { "commit": "9f8d33c8b2b", "subject": "hgSession: new opt-in JavaScript \"My Sessions\" page; share gbModern.css with hgBlat. refs #38157", "tickets": [ @@ -3271,96 +3304,103 @@ "tickets": [], "ts": 1757518383, "version": 488, "via": "call" }, "showLiftRequest": { "commit": "fbfdc0a36bb", "subject": "hgConvert: link to the alignment request page, behind showLiftRequest, refs #37973", "tickets": [ 37973 ], "ts": 1785534915, "version": 502, "via": "call" }, + "showManeInSearch": { + "commit": "1db5c89d97f", + "subject": "hgSearch: highlight MANE transcript(s) in RefSeq protein-position search results, refs #38285", + "tickets": [ + 38285 + ], + "ts": 1789646996, + "version": 504, + "via": "call" + }, "showMouseovers": { "commit": "447513356fc", "subject": "Add code to create tooltips under our control. Convert title attributes", "tickets": [], "ts": 1680797081, "version": 451, "via": "call" }, "showTableCache": { "commit": "b60e379ef27", "subject": "support showTableCache config in sqlListTables", "tickets": [], "ts": 1251159044, "version": 214, "via": "call" }, "showTutorial": { "commit": "13a71608b50", "subject": "Proof of concept tutorial overlay done", "tickets": [], "ts": 1676665727, "version": 450, "via": "call" }, "showTxCodonNumbers": { "commit": "68b9911e4c1", - "released": false, "subject": "Show the transcript's own codon number where it differs from the genomic one", "tickets": [ 38298 ], "ts": 1788968947, "version": 504, "via": "call" }, "signalsHandler": { "commit": "137dba98ca8", "subject": "added handler for a few signals that will log the errors", "tickets": [], "ts": 1192231361, "version": 169, "via": "call" }, "skipMalformedCgiPairs": { "commit": "3eedbb76366", - "released": false, "subject": "Skip a CGI or cookie pair with no =value in three more parsers, refs #38340", "tickets": [ 38335, 38340 ], "ts": 1789154414, "version": 504, "via": "call" }, "sleepOn429": { "commit": "1db14ecb301", "subject": "making sleep depend on hg.conf statement suggested by Jonathan, no redmine ticket yet", "tickets": [], "ts": 1747075805, "version": 482, "via": "call" }, "snapshot.ttlDays": { "commit": "32cd2100d9d", - "released": false, "subject": "Reusable \"view snapshot\" sessions for durable, minimal Share-a-link links", "tickets": [ 38197 ], "ts": 1788271324, "version": 504, "via": "call" }, "sqlNeverLocal": { "commit": "9348f62b4a8", "subject": "adding flag to hg.conf to disable LOCAL in mysql commands entirely", "tickets": [], "ts": 1378947455, "version": 290, "via": "call" @@ -3499,30 +3539,40 @@ "tickets": [ 17622 ], "ts": 1468945272, "version": 336, "via": "call" }, "svgBarChart": { "commit": "ea164606817", "subject": "Putting this under control of svgBarChart variable in hg.conf to keep feature from leaking to users too soon. Changing ", "tickets": [], "ts": 1610398585, "version": 409, "via": "call" }, + "syncHubApiKeys": { + "commit": "14ecff07305", + "subject": "hgHubConnect: an api key made on one geo mirror now works on all of them, behind syncHubApiKeys", + "tickets": [ + 38323 + ], + "ts": 1789747566, + "version": 504, + "via": "call" + }, "tableList": { "commit": "8b03c499cbf", "subject": "use showTableCache config option", "tickets": [], "ts": 1307643864, "version": 253, "via": "call" }, "test.preview": { "commit": "b312b42ad8c", "subject": "Support for genome browser preview site.", "tickets": [], "ts": 1296195020, "version": 247, "via": "call" @@ -3688,36 +3738,38 @@ "subject": "implements blat results to custom track using bigPsl. Requires hg.conf", "tickets": [], "ts": 1479949312, "version": 342, "via": "call" }, "userDataDir": { "commit": "c79deb30151", "subject": "Experiment number one, can succesfully upload a file and store it via", "tickets": [], "ts": 1683331173, "version": 476, "via": "call" }, "userDbName": { - "commit": "1d8785d66ed", - "subject": "allow for different names for the sessionDb and userDb tables", - "tickets": [], - "ts": 1428523543, - "version": 315, - "via": "literal" + "commit": "c62c5810fff", + "subject": "pyLib: align the python bottleneck code with hg/lib/botDelay.c, refs #38369", + "tickets": [ + 38369 + ], + "ts": 1789652279, + "version": 504, + "via": "call" }, "vcfMaxItems": { "commit": "5a73e86ce84", "subject": "limit VCF track loads to 10,000 items", "tickets": [], "ts": 1705608166, "version": 460, "via": "literal" }, "versionStamped": { "commit": "584b419ec86", "subject": "changes to facilitate beta builds on dev. Appropriating beta target, and assuming that USER=beta exists on dev.", "tickets": [], "ts": 1374884581, "version": 287, @@ -3974,44 +4026,52 @@ ], "ts": 1768508493, "version": 493, "via": "call" }, "quickLiftClipToChains": { "commit": "7f65d3da8f2", "subject": "quickLift: clip an oversized item to the chains we loaded instead of dropping it, refs #38042", "tickets": [ 38042 ], "ts": 1786129679, "version": 503, "via": "call" }, + "sessionLoadNotice": { + "commit": "3bcf86a0995", + "subject": "hgTracks: tell the user what a session load just did, refs #38157", + "tickets": [ + 38157 + ], + "ts": 1789740928, + "version": 504, + "via": "call" + }, "showAliases": { "commit": "c69d3e1d9de", - "released": false, "subject": "hgTracks: turn on chromAlias names by default, refs #29201", "tickets": [ 29201 ], "ts": 1789064034, "version": 504, "via": "call" }, "showColorPicker": { "commit": "ba5aa085f49", - "released": false, "subject": "hui.c: turn the track color picker on by default, refs #20460", "tickets": [ 20460 ], "ts": 1789063395, "version": 504, "via": "call" }, "showDownloadUi": { "commit": "f56632e7b85", "subject": "Make 'download tracks in view' menu option present by default. Can still be turned off via hg.conf", "tickets": [], "ts": 1719608805, "version": 468, "via": "call" @@ -6059,19 +6119,23 @@ [ 500, "ca3f79d3f99dc69466ff167a62df20013f26f0e0" ], [ 501, "77bf415bd054a996057ac32cfd0966aa0202be66" ], [ 502, "8b8a7a3b6f869eec4052714460b94d39115538cd" ], [ 503, "1606fc917aecf60bcc17002a8602678d763f39e5" + ], + [ + 504, + "74623f843857f2254e5327c78b98f00c3f7098ff" ] ], "schema": 3 } \ No newline at end of file