a7cdd40a9c37d4d90c7aa9766c5248c0cb3f259a
braney
  Wed May 21 17:22:17 2025 -0700
add bedMethyl type for custom and native tracks

diff --git src/hg/lib/bedMethyl.as src/hg/lib/bedMethyl.as
new file mode 100644
index 00000000000..0c1c30fa554
--- /dev/null
+++ src/hg/lib/bedMethyl.as
@@ -0,0 +1,23 @@
+table bedMethyl
+"Browser extensible data for bedmethyl files (bed9+9)"
+    (
+    string chrom;      "Chromosome (or contig, scaffold, etc.)"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Name of item"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Start of where display should be thick (start codon)"
+    uint thickEnd;     "End of where display should be thick (stop codon)"
+    uint reserved;     "Used as itemRgb as of 2004-11-22"
+    string nValidCov;       "Valid Coverage|N_mod + N_otherMod + N_canonical"
+    string percMod;       "Percent Modified"
+    string nMod;       "N_mod|Number of calls with a modified base"
+    string nCanon;       "N_canonical|Number of calls with a canonical base"
+    string nOther;       "N_otherMod|Number of calls with a modified base, other modification"
+    string nDelete;       "N_delete|Number of reads with a deletion at this reference position"
+    string nFail;       "N_fail|Number of calls where the probability of the call was below the threshold. "
+    string nDiff;       "N_diff|Number of reads with a base other than the canonical base for this modification. "
+    string nNoCall;       "N_nocall|Number of reads aligned to this reference position, with the correct canonical base, but without a base modification call."
+    )
+