1a2f5a5b07855da8d191c0b9358c945d6abe9f74 braney Mon Sep 28 15:17:28 2026 -0700 trackDb: fix the netThaSir1 chain table and drop missing hg18 pgSnp prediction tables, refs #37424 The hg38 netThaSir1 stanza was copied from netAnoCar1 and kept its type line, so hgc looked for chainAnoCar1 and every click failed. It now names thaSir1 and chainThaSir1. The hg18 pgKb1Comb, pgNb1, pgMd8, pgTk1 and pgAbtSolid tracks named SIFT and PolyPhen tables that exist only on hgwdev and were never released. The details page warned on every click on beta and the RR. The two settings are removed. diff --git src/hg/makeDb/trackDb/human/chainNetVertebrate.ra src/hg/makeDb/trackDb/human/chainNetVertebrate.ra index 2e60f75f9d2..35fdfd069e3 100644 --- src/hg/makeDb/trackDb/human/chainNetVertebrate.ra +++ src/hg/makeDb/trackDb/human/chainNetVertebrate.ra @@ -1,1225 +1,1225 @@ track vertebrateChainNet compositeTrack on shortLabel Vertebrate Chain/Net longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments subGroup1 view Views chain=Chains net=Nets subGroup2 species Species s000=Wallaby s001=Wallaby s002=Tasmanian_devil s003=Opossum s004a=Platypus s004b=Platypus s005=Platypus s006=Turkey s007a=Turkey s007b=Japanese_quail s008a=Chicken s008b=Chicken s009=Chicken s010=Chicken s011=Mallard_duck s012=Scarlet_macaw s013=Medium_ground_finch s014=White-throated_sparrow s015=Collared_flycatcher s016=Golden_eagle s017=Peregrine_falcon s018=Saker_falcon s019=Rock_pigeon s020=Parrot s021=Budgerigar s022=Tibetan_ground_jay s023=Zebra_finch s024=Zebra_finch s025=American_alligator s026=Chinese_alligator s027=Lizard s028=Lizard s028b=Garter_snake s029a=Axolotl s029b=X._tropicalis s029c=X._tropicalis s030=X._tropicalis s031=X._tropicalis s032=X._tropicalis s033=X._tropicalis s034=African_clawed_frog s035=Spiny_softshell_turtle s036=Chinese_softshell_turtle s037=Painted_turtle s038=Painted_turtle s039=Green_seaturtle s040=Coelacanth s041=Spotted_gar s042=Mexican_tetra_(cavefish) s043=Zebrafish s044=Zebrafish s045=Zebrafish s046=Zebrafish s047=Zebrafish s048=Atlantic_cod s049=Stickleback s050=Southern_platyfish s051=Medaka s052=Pundamilia_nyererei s053=Zebra_mbuna s054=Princess_of_Burundi s055=Burton's_mouthbreeder s056=Nile_tilapia s057=Nile_tilapia s058=Nile_tilapia s059=Yellowbelly_pufferfish s060=Fugu s061=Fugu s062=Tetraodon s063=Tetraodon s064a=Lamprey s064b=Lamprey s065=Lamprey s066=Arctic_lamprey subGroup3 clade Clade c00=mammalia c01=dinosauria c02=lepidosauria c03=amphibia c04=cryptodira c05=coelancanthimorpha c06=neopterygii c07=hyperoartia dragAndDrop subTracks visibility hide group compGeno noInherit on color 0,0,0 altColor 255,255,0 type bed 3 chainLinearGap loose chainMinScore 5000 dimensions dimensionX=clade dimensionY=species sortOrder species=+ view=+ clade=+ configurable on html vertebrateChainNet priority 9 track vertebrateChainNetViewchain shortLabel Chains view chain visibility pack subTrack vertebrateChainNet spectrum on track chainMacEug2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s000 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain macEug2 otherDb macEug2 track chainMacEug1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s001 clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain macEug1 otherDb macEug1 track chainSarHar1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s002 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain sarHar1 otherDb sarHar1 track chainMonDom5 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s003 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain monDom5 otherDb monDom5 track chainGCF_004115215.2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s004a clade=c00 shortLabel Platypus Chain longLabel Platypus (Nov. 2020 GCF_004115215.2_mOrnAna1.pri.v4) Chained Alignments type bigChain GCF_004115215.2 bigDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_004115215.2.bb linkDataUrl /gbdb/$D/bbi/chainNet/$D.chainGCF_004115215.2Link.bb otherDb GCF_004115215.2 track chainOrnAna2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s004b clade=c00 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ornAna2 otherDb ornAna2 track chainOrnAna1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s005 clade=c00 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ornAna1 otherDb ornAna1 track chainMelGal5 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s006 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain melGal5 otherDb melGal5 track chainMelGal1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s007a clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain melGal1 otherDb melGal1 track chainCotJap2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s007b clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain cotJap2 otherDb cotJap2 track chainGalGal6 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s008a clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain galGal6 otherDb galGal6 track chainGalGal5 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s008b clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain galGal5 otherDb galGal5 track chainGalGal4 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s009 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain galGal4 otherDb galGal4 track chainGalGal3 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s010 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain galGal3 otherDb galGal3 track chainAnaPla1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s011 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain anaPla1 otherDb anaPla1 track chainAraMac1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s012 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain araMac1 otherDb araMac1 track chainGeoFor1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s013 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain geoFor1 otherDb geoFor1 track chainZonAlb1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s014 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain zonAlb1 otherDb zonAlb1 track chainFicAlb2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s015 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ficAlb2 otherDb ficAlb2 track chainAquChr2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s016 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain aquChr2 otherDb aquChr2 track chainFalPer1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s017 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain falPer1 otherDb falPer1 track chainFalChe1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s018 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain falChe1 otherDb falChe1 track chainColLiv1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s019 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain colLiv1 otherDb colLiv1 track chainAmaVit1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s020 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain amaVit1 otherDb amaVit1 track chainMelUnd1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s021 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain melUnd1 otherDb melUnd1 track chainPseHum1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s022 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain pseHum1 otherDb pseHum1 track chainTaeGut2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s023 clade=c01 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain taeGut2 otherDb taeGut2 track chainTaeGut1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s024 clade=c01 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain taeGut1 otherDb taeGut1 track chainAllMis1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s025 clade=c02 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain allMis1 otherDb allMis1 track chainAllSin1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s026 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain allSin1 otherDb allSin1 track chainAnoCar2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s027 clade=c02 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain anoCar2 otherDb anoCar2 track chainAnoCar1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s028 clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain anoCar1 otherDb anoCar1 track chainThaSir1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s028b clade=c02 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain thaSir1 otherDb thaSir1 track chainAmbMex1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s029a clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ambMex1 otherDb ambMex1 track chainXenTro10 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s029b clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro10 otherDb xenTro10 track chainXenTro9 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s029c clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro9 otherDb xenTro9 track chainXenTro7 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s030 clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro7 otherDb xenTro7 track chainXenTro3 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s031 clade=c03 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro3 otherDb xenTro3 track chainXenTro2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s032 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro2 otherDb xenTro2 track chainXenTro1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s033 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro1 otherDb xenTro1 track chainXenLae2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s034 clade=c03 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenLae2 otherDb xenLae2 track chainApaSpi1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s035 clade=c04 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain apaSpi1 otherDb apaSpi1 track chainPelSin1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s036 clade=c04 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain pelSin1 otherDb pelSin1 track chainChrPic2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s037 clade=c04 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chrPic2 otherDb chrPic2 track chainChrPic1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s038 clade=c04 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chrPic1 otherDb chrPic1 track chainCheMyd1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s039 clade=c04 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain cheMyd1 otherDb cheMyd1 track chainLatCha1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s040 clade=c05 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain latCha1 otherDb latCha1 track chainLepOcu1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s041 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain lepOcu1 otherDb lepOcu1 track chainAstMex1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s042 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain astMex1 otherDb astMex1 track chainDanRer11 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s043 clade=c06 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain danRer11 otherDb danRer11 track chainDanRer10 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s044 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain danRer10 otherDb danRer10 track chainDanRer7 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s045 clade=c06 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain danRer7 otherDb danRer7 track chainDanRer6 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s046 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain danRer6 otherDb danRer6 track chainDanRer5 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s047 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain danRer5 otherDb danRer5 track chainGadMor1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s048 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain gadMor1 otherDb gadMor1 track chainGasAcu1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s049 clade=c06 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain gasAcu1 otherDb gasAcu1 track chainXipMac1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s050 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xipMac1 otherDb xipMac1 track chainOryLat2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s051 clade=c06 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain oryLat2 otherDb oryLat2 track chainPunNye1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s052 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain punNye1 otherDb punNye1 track chainMayZeb1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s053 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain mayZeb1 otherDb mayZeb1 track chainNeoBri1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s054 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain neoBri1 otherDb neoBri1 track chainHapBur1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s055 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain hapBur1 otherDb hapBur1 track chainOreNil3 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s056 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain oreNil3 otherDb oreNil3 track chainOreNil2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s057 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain oreNil2 otherDb oreNil2 track chainOreNil1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s058 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain oreNil1 otherDb oreNil1 track chainTakFla1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s059 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain takFla1 otherDb takFla1 track chainFr3 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s060 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain fr3 otherDb fr3 track chainFr2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s061 clade=c06 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain fr2 otherDb fr2 track chainTetNig2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s062 clade=c06 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain tetNig2 otherDb tetNig2 track chainTetNig1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s063 clade=c06 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain tetNig1 otherDb tetNig1 track chainPetMar3 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s064a clade=c07 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain petMar3 otherDb petMar3 track chainPetMar2 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s064b clade=c07 shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain petMar2 otherDb petMar2 track chainPetMar1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s065 clade=c07 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain petMar1 otherDb petMar1 track chainLetCam1 subTrack vertebrateChainNetViewchain off subGroups view=chain species=s066 clade=c07 shortLabel $o_db Chain longLabel $o_Organism ($o_date) Chained Alignments type chain letCam1 otherDb letCam1 track vertebrateChainNetViewnet shortLabel Nets view net visibility dense subTrack vertebrateChainNet track netMacEug2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s000 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign macEug2 chainMacEug2 otherDb macEug2 track netMacEug1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s001 clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign macEug1 chainMacEug1 otherDb macEug1 track netSarHar1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s002 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign sarHar1 chainSarHar1 otherDb sarHar1 track netMonDom5 subTrack vertebrateChainNetViewnet on subGroups view=net species=s003 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign monDom5 chainMonDom5 otherDb monDom5 track netGCF_004115215.2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s004a clade=c00 shortLabel Platypus Net longLabel Platypus (Nov. 2020 GCF_004115215.2_mOrnAna1.pri.v4) Net Alignment type bigMaf bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_004115215.2.net.bb summary /gbdb/$D/bbi/chainNet/$D.GCF_004115215.2.net.summary.bb speciesOrder GCF_004115215.2 speciesLabels GCF_004115215.2="Platypus" otherDb GCF_004115215.2 track netOrnAna2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s004b clade=c00 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ornAna2 chainOrnAna2 otherDb ornAna2 track netOrnAna1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s005 clade=c00 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ornAna1 chainOrnAna1 otherDb ornAna1 track netMelGal5 subTrack vertebrateChainNetViewnet off subGroups view=net species=s006 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign melGal5 chainMelGal5 otherDb melGal5 track netMelGal1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s007a clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign melGal1 chainMelGal1 otherDb melGal1 track netCotJap2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s007b clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign cotJap2 chainCotJap2 otherDb cotJap2 track netGalGal6 subTrack vertebrateChainNetViewnet on subGroups view=net species=s008a clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign galGal6 chainGalGal6 otherDb galGal6 track netGalGal5 subTrack vertebrateChainNetViewnet on subGroups view=net species=s008b clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign galGal5 chainGalGal5 otherDb galGal5 track netGalGal4 subTrack vertebrateChainNetViewnet off subGroups view=net species=s009 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign galGal4 chainGalGal4 otherDb galGal4 track netGalGal3 subTrack vertebrateChainNetViewnet off subGroups view=net species=s010 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign galGal3 chainGalGal3 otherDb galGal3 track netAnaPla1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s011 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign anaPla1 chainAnaPla1 otherDb anaPla1 track netAraMac1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s012 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign araMac1 chainAraMac1 otherDb araMac1 track netGeoFor1 subTrack vertebrateChainNetViewnet on subGroups view=net species=s013 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign geoFor1 chainGeoFor1 otherDb geoFor1 track netZonAlb1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s014 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign zonAlb1 chainZonAlb1 otherDb zonAlb1 track netFicAlb2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s015 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ficAlb2 chainFicAlb2 otherDb ficAlb2 track netAquChr2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s016 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign aquChr2 chainAquChr2 otherDb aquChr2 track netFalPer1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s017 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign falPer1 chainFalPer1 otherDb falPer1 track netFalChe1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s018 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign falChe1 chainFalChe1 otherDb falChe1 track netColLiv1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s019 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign colLiv1 chainColLiv1 otherDb colLiv1 track netAmaVit1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s020 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign amaVit1 chainAmaVit1 otherDb amaVit1 track netMelUnd1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s021 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign melUnd1 chainMelUnd1 otherDb melUnd1 track netPseHum1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s022 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign pseHum1 chainPseHum1 otherDb pseHum1 track netTaeGut2 subTrack vertebrateChainNetViewnet on subGroups view=net species=s023 clade=c01 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign taeGut2 chainTaeGut2 otherDb taeGut2 track netTaeGut1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s024 clade=c01 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign taeGut1 chainTaeGut1 otherDb taeGut1 track netAllMis1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s025 clade=c02 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign allMis1 chainAllMis1 otherDb allMis1 track netAllSin1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s026 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign allSin1 chainAllSin1 otherDb allSin1 track netAnoCar2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s027 clade=c02 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign anoCar2 chainAnoCar2 otherDb anoCar2 track netAnoCar1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s028 clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign anoCar1 chainAnoCar1 otherDb anoCar1 track netThaSir1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s028b clade=c02 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net - type netAlign anoCar1 chainAnoCar1 + type netAlign thaSir1 chainThaSir1 otherDb thaSir1 track netAmbMex1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s029a clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ambMex1 chainAmbMex1 otherDb ambMex1 track netXenTro10 subTrack vertebrateChainNetViewnet on subGroups view=net species=s029b clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro10 chainXenTro10 otherDb xenTro10 track netXenTro9 subTrack vertebrateChainNetViewnet on subGroups view=net species=s029c clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro9 chainXenTro9 otherDb xenTro9 track netXenTro7 subTrack vertebrateChainNetViewnet off subGroups view=net species=s030 clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro7 chainXenTro7 otherDb xenTro7 track netXenTro3 subTrack vertebrateChainNetViewnet off subGroups view=net species=s031 clade=c03 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro3 chainXenTro3 otherDb xenTro3 track netXenTro2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s032 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro2 chainXenTro2 otherDb xenTro2 track netXenTro1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s033 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro1 chainXenTro1 otherDb xenTro1 track netXenLae2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s034 clade=c03 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenLae2 chainXenLae2 otherDb xenLae2 track netApaSpi1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s035 clade=c04 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign apaSpi1 chainApaSpi1 otherDb apaSpi1 track netPelSin1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s036 clade=c04 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign pelSin1 chainPelSin1 otherDb pelSin1 track netChrPic2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s037 clade=c04 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chrPic2 chainChrPic2 otherDb chrPic2 track netChrPic1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s038 clade=c04 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chrPic1 chainChrPic1 otherDb chrPic1 track netCheMyd1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s039 clade=c04 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign cheMyd1 chainCheMyd1 otherDb cheMyd1 track netLatCha1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s040 clade=c05 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign latCha1 chainLatCha1 otherDb latCha1 track netLepOcu1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s041 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign lepOcu1 chainLepOcu1 otherDb lepOcu1 track netAstMex1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s042 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign astMex1 chainAstMex1 otherDb astMex1 track netDanRer11 subTrack vertebrateChainNetViewnet on subGroups view=net species=s043 clade=c06 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign danRer11 chainDanRer11 otherDb danRer11 track netDanRer10 subTrack vertebrateChainNetViewnet off subGroups view=net species=s044 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign danRer10 chainDanRer10 otherDb danRer10 track netDanRer7 subTrack vertebrateChainNetViewnet on subGroups view=net species=s045 clade=c06 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign danRer7 chainDanRer7 otherDb danRer7 track netDanRer6 subTrack vertebrateChainNetViewnet off subGroups view=net species=s046 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign danRer6 chainDanRer6 otherDb danRer6 track netDanRer5 subTrack vertebrateChainNetViewnet off subGroups view=net species=s047 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign danRer5 chainDanRer5 otherDb danRer5 track netGadMor1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s048 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign gadMor1 chainGadMor1 otherDb gadMor1 track netGasAcu1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s049 clade=c06 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign gasAcu1 chainGasAcu1 otherDb gasAcu1 track netXipMac1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s050 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xipMac1 chainXipMac1 otherDb xipMac1 track netOryLat2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s051 clade=c06 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign oryLat2 chainOryLat2 otherDb oryLat2 track netPunNye1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s052 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign punNye1 chainPunNye1 otherDb punNye1 track netMayZeb1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s053 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign mayZeb1 chainMayZeb1 otherDb mayZeb1 track netNeoBri1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s054 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign neoBri1 chainNeoBri1 otherDb neoBri1 track netHapBur1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s055 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign hapBur1 chainHapBur1 otherDb hapBur1 track netOreNil3 subTrack vertebrateChainNetViewnet off subGroups view=net species=s056 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign oreNil3 chainOreNil3 otherDb oreNil3 track netOreNil2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s057 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign oreNil2 chainOreNil2 otherDb oreNil2 track netOreNil1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s058 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign oreNil1 chainOreNil1 otherDb oreNil1 track netTakFla1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s059 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign takFla1 chainTakFla1 otherDb takFla1 track netFr3 subTrack vertebrateChainNetViewnet on subGroups view=net species=s060 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign fr3 chainFr3 otherDb fr3 track netFr2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s061 clade=c06 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign fr2 chainFr2 otherDb fr2 track netTetNig2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s062 clade=c06 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign tetNig2 chainTetNig2 otherDb tetNig2 track netTetNig1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s063 clade=c06 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign tetNig1 chainTetNig1 otherDb tetNig1 track netPetMar3 subTrack vertebrateChainNetViewnet off subGroups view=net species=s064a clade=c07 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign petMar3 chainPetMar3 otherDb petMar3 track netPetMar2 subTrack vertebrateChainNetViewnet off subGroups view=net species=s064b clade=c07 shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign petMar2 chainPetMar2 otherDb petMar2 track netPetMar1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s065 clade=c07 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign petMar1 chainPetMar1 otherDb petMar1 track netLetCam1 subTrack vertebrateChainNetViewnet off subGroups view=net species=s066 clade=c07 shortLabel $o_db Net longLabel $o_Organism ($o_date) Alignment Net type netAlign letCam1 chainLetCam1 otherDb letCam1