147740e133aa59c5aa7938ef68f1b66f3696c701
braney
  Fri Mar 13 15:29:49 2026 -0700
Revert noDots mafClick/mafFrag work from master, refs #21477

Remove the mafClickMafFrag/noDots code path from mafClick.c, hgMaf.c,
hgMaf.h, and mafFrag.c. Also remove mafFrag unit tests added as part
of this work. The code is preserved on the mafFragNoDots and
mafClickMafFrag branches.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

diff --git src/hg/ratStuff/mafFrag/makefile src/hg/ratStuff/mafFrag/makefile
index a5589a646f1..a63550b871b 100644
--- src/hg/ratStuff/mafFrag/makefile
+++ src/hg/ratStuff/mafFrag/makefile
@@ -1,6 +1,10 @@
 kentSrc = ../../..
 A = mafFrag
 include ${kentSrc}/inc/userApp.mk
 
 test::
-	cd tests && ${MAKE} test
+	mafFrag hg16 rat_hmrg chr2 69065807 69073183 - test.maf
+	@diff test.maf expected.maf
+
+clean::
+	rm -f test.maf