2da16dce988cd42c7d97019eebd9660bfe20b68b braney Tue Mar 10 17:55:26 2026 -0700 Update mafFrag test expected outputs for source coordinate tracking Regenerate expected files to reflect hgMafFragHelper now preserving full source (db.chrom), start, size, srcSize, and strand for non-reference species instead of placeholder values. Co-Authored-By: Claude Opus 4.6 diff --git src/hg/ratStuff/mafFrag/tests/expected/basic.maf src/hg/ratStuff/mafFrag/tests/expected/basic.maf index 777292ef2d5..fda1d45649f 100644 --- src/hg/ratStuff/mafFrag/tests/expected/basic.maf +++ src/hg/ratStuff/mafFrag/tests/expected/basic.maf @@ -1,5 +1,5 @@ ##maf version=1 scoring=zero a score=0.000000 s hg38.chr1 11000 100 + 248956422 aagcctacgggcgggggttgggggggcgtgtgttgcaggagcaaagtcgcacggcgccgggctggggcggggggagggtggcgccgtgcacgcgcagaaa -s panTro4 0 94 + 94 acgcctatgggcgggggttgcgggg-cgcgtggtgcaggagcaaagtcgcacggagcctgtctgggg-----gcaggtgggctccgtgcaggcgcagaaa +s panTro4.chr15 13681 94 - 99548318 acgcctatgggcgggggttgcgggg-cgcgtggtgcaggagcaaagtcgcacggagcctgtctgggg-----gcaggtgggctccgtgcaggcgcagaaa