147740e133aa59c5aa7938ef68f1b66f3696c701 braney Fri Mar 13 15:29:49 2026 -0700 Revert noDots mafClick/mafFrag work from master, refs #21477 Remove the mafClickMafFrag/noDots code path from mafClick.c, hgMaf.c, hgMaf.h, and mafFrag.c. Also remove mafFrag unit tests added as part of this work. The code is preserved on the mafFragNoDots and mafClickMafFrag branches. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> diff --git src/hg/ratStuff/mafFrag/tests/expected/larger.maf src/hg/ratStuff/mafFrag/tests/expected/larger.maf deleted file mode 100644 index 2b4c1a4811f..00000000000 --- src/hg/ratStuff/mafFrag/tests/expected/larger.maf +++ /dev/null @@ -1,29 +0,0 @@ -##maf version=1 scoring=zero -a score=0.000000 -s hg38.chr1 100000 500 + 248956422 actaagcacacagagaataatgtctagaatctgagtgccatgtt--atcaaa-ttgtactgagactcttgcagtcacacaggc-tgacatg-taagcatcgccatgcctagtacagactctccctgca-gatgaaattatatgggatgctaaattataatgagaacaatgtttggtgagcca-aaactacaacaaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcttaattcactctcccttatcataagg------a---taatcttgccta-aagggacagtaatattAAAGAC-ACTAGGAATAACCTCTGTACTTTGGACAGT----AGACCTGCATAGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatttgccattt-aaggtgattctcca-tgtttctgctcta-aCTGTGCTTCACAA-TACTCAAAACACTA----------AATCAGGATGTTTCCTGGAGTTCAGGGAGCTGTCCGTGTTACTGAGCAGTTC -s panTro4.chr10 94481038 384 - 133524379 ..........................................................................................................................cctgca-gatgaaattatatgggatgccaaattataatcagaacaatgtttggtgagcca-aaactacaacaaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcttaattcagtctcccttatcataagg------a---taatcttgccta-aagggacagtaatattAAAGAC-ACTAGGAATAACCTCTGTACTTTGGACAGT----AGACCTGCATAGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatttgccgttttaaggtgattctcca-tgtttctgctcta-aCTGTGCTTCACAA-TACTCAAGACACTG----------AATCAGGATGTTTCCTGGAGTGCAGGGAGCTGTCCGTGTTACTGAGCAGTTC -s ponAbe2.chr1 223770897 499 - 229942017 actaaacacacagagaataatgtatagaatctgagtgccatatt--atcaaa-ttatactgagactcttgcagtcacacgggc-tgatatg-taagcatcgtcatgcctagtacagactctctctgca-gatgaaattatatgggttgctaaattataatcagaacaatgtttggtgagcca-aaactacaacaaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcttaatgcagtctcccttaccataagg------a---taa--ttgccta-aagggacagtaatattaaagac-actaggaataacctctctactttggacagt----AGACCTGCATAGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatttaccattttaaggtgattctcca-tgtttctgctcta-aCTGTGATTCACAA-TACTCAAGACACCA----------AATCAGGATGTTCCCTGGAGTGCAGGGAGCTGTCCGTGGTCCTGAGCAGCTC -s nomLeu3.chr7b_GL397639_2_random 52831 501 + 172226 actaagcacacagagaataatgtacagaatctgagtgccatgtt--atcaaa-ttatactgagacgcttgcagtcacacaggc-tgatatg-taagcatcgtcatgcctagtacagactctccctgca-gatgaaattatatgggatgctaaattataatcagaacaatgtttggtgagcca-gaactacaacaaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcttaatgcagtctcccttatcataagg------a---taatcttgccta-aagggacagtaatattaaagac-actaggaataacctctctactttggacagt----AGACCTGCATAGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatttaccattttaaggtgattctcca-tgtttctgctcta-aCTGTGCTTCACAA-TACTTAAAACACTG----------AATCAGGATGTTCCCTGGAGTTCAGGGAGCTGTCCGTGGTCTTGAGCAGCTC -s rheMac3.chr1 14400752 496 - 229590362 actaagcacacagagaataatgtatggaatctgagtgccatgtt--atcaaa-ttatactgagactcttgcagtcacacgggc-tgatatg-caaccattgtcacgcctagtacagactctccctgca-gatgaaattatatggcatgctaaattacaatcagaacaatgtttggtgagcca-aaactacaatgaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcttaatgcagtctcccttatcaaaaga------a---taatcttgccta-aagggatagtaat-----aGAC-ACTAGGAATGACTTCTGTACTTTGGACAGT----AGACCTGCAGGGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatttaccattttaaggtgattctcca-tgtttctgctcta-aCTGTGCTTTACAA-TACTCAAAACACTG----------AATCAGGATGTTCCCTGGAGGTCAGGGAGCTGTCCGTGGTCCTGAGCAGCTC -s macFas5.chr1 221132935 496 - 227556264 actaagcacacagagaataatgtatggaatctgagtgccatgtt--atcaaa-ttatactgagactcttgcagtcacacgggc-tcatatg-taagcattgtcatgcctagtacagactctccctgca-gatgaaattatatggcatgctaaattacaatcagaacaatgtttggtgagcca-aaactacaatgaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcttaatgcagtctcccttatcaaaaga------a---taatcttgccta-aagggatagtaat-----aGAC-ACTAGGAATGACTTCTGTACTTTGGACAGT----AGACCTGCAGGGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatttaccattttaaggtgattctcca-tgtttctgctcta-aCTGTGCTTTACAA-TACTCAAAACACTG----------AATCAGGATGTTCCCTGGAGATCAGGGAGCTGTCCGTGGTCCTGAGCAGCTC -s chlSab2.chr25 80073330 488 + 85787240 actaagcacacagagaataatgtatggaatctgagtgtcatgtt--atcaaa-ttatactgagactcttgcagtcacacgggc-tgatata-taagcattgtcatgcctagtacagactctccttgca-gatgaaattatatggcatgctaaattacaatcagaacaatgtttggtgagc---------caatgaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagtttaatgcagtctcccttatcaaaaga------a---taatcttgccta-aagggatagtaat-----aGAC-ACTAGGAATGACTTCTGTACTTTGGACAGT----AGACCTGCAGGGCCCa-ttaggcctcaatgaagtcttatgcaagaccagaagccaatgtaccattttaaggtgattctcca-tgtttctgctcta-aCTGTGCTTCACAA-TACTCAAAACACTG----------AATCAGGATGTTCCCTGGAGGTCAGGGAGCTGTCCATGGTCCTGAGCAGCTC -s saiBol1.JH378177 6411233 499 - 11194871 actaagcacacagagaataatgtgtagaatctgggtgtcatgtt--atcaaa-atacctggagattcttatagtcacatgggc-tgatatg-taagcattgtcatgcctagtacattctctctctgca-gatgaaattatacgggatgctaaattataatcagaacaatgtatggtgagcaagaaagtacaacaaggg-------aagctaattggatgaatttat-aaaaatatgcctcagccaaaatagcctaatgcaatctccctcatcataagg------g---taatcttgccta-aagggacagtaatgttgaagac-actaggaaaaacttctctactttggacaAC----AGACCTGCATAGCCTA-TTAAGCCTCAATTCAGTCTTATGT-ATATCAGAAGCCAATTTACCATTTGAAGGTGATTCTCCA-TGTTTCTGCTCTA-AGTGTGCTTCACAG-TACTCGAAACA-.G----------AATCACGATGTTCCCTGGAGTTCAGGGAGCTGTCCGTGGTCCTGAGCAGCTC -s otoGar3.GL873660 804885 374 - 5244756 actaaacaaacagaaaataatacatagaaccaagttgacaagtt--atcaaa-ttatactgagacttctgctgccacacatgc-taaaatg-ttagcattatcatgcgtagtacatcctctccctaca-ggtggaactatata-------acatcataatcagaataatgtctgatgatcaaggaaccaaaacaatgg-------aaattaattggataaatct-t-agaaatatacctcagccacaatagcttaaggcagtcttcctcatcagaagg------g---taatcttgcccc-atgagacagtaatattgaagAC-ATTAGGAATAACTTCTCTACTTTAGATAGT-----------------CCA-TTAGCCTTTAATTAAGTCCTATACAAGACCAAAAGCCggctcggcgccta-....................................................................................................................... -s tupChi1.KB320992 2664137 495 + 10005445 ACTAAGCTTACCAAGAAAAATGTATGGAAACAGGGTGTCAAGTT--CTCAAA-TTATACAGAGACTTTTGCAATCACATGGGC-TGAAATG-TTAGTAT---CATACC---CACATTTTCTCCCTGCA-GATGGAATTATATGAGATGCTGAATTATAATAAGAATCATGTTTCATGAGCACGGATACACAAC------------AAGTTATTTGAATAAATTTGT-AGACATATGCTTCAGCCAAAATAGCATAAGGCAGTGTCCCTTGT---AAGG------A---TAATCTTGCCCA-ATGGGACAGTAATACTGaagac-acaagaaaaaaatcctcaattTTGGACAGTTC--TGACTTGCATAGTCCAGTTAGCCTTCAGTTCAGTCTTATACAAAACC-TAAGCCAGTTTACCATTTGAATGTGTTTTTCCA-GATCTGTGCTCTA-A--GTAACTCACAG-GGCTGGAGACCCTGA-AGTAGGGTAACCAAGATCTTCCCTAGAGTG-ACAGAGCTGTCCGTGGTGCTGAACCAA-A -s speTri2.JH393336 2752899 450 - 10378366 actaagcatacagaaaataatatatagaa--------ctagTCA---------------TGGACTGGTTGCAGTCATATGAGC-TGAAAT--TTAATACTGTTatgtctagtaaactctcc-tctgca-gatggaatcatatgggattatg-attataataaga--------ttgtgggtaagtaaccacaactttgg-------aaataaagtagataaatttgt-agaagtatgcccctgtctaaatagcatacggcagtctccctcatcataaggataagga---taatcttgctca-atgggacagtaatattgagca--------agctactcctctgctttagacagttc------ttgcctggCTCA-TTGAGCT--CATAAAGTTTCATAGAAAATCAA--ATTAATTCATCATTTTAAGGTGTTTCACTATTATCTCTGTTTTA-ACTCTGGTTCAAAT-GACTCAAGACATCA----------AAATAG---------TGG------GGGAGTTGTCCATGGTCCTGAACCATTA -s octDeg1.JH651532 12389308 372 - 24977595 attaagcccacagaaaataatgtatagca--------ccaagta--agcaaa-tcatactggatcctttgcagcaccatgggt-tgaaata-tttgcattctcatgcctagtatattctct-cctgcgtgatgaaattacatgaggtgttgaattataaccaaa-taatgcctggtgagcgaggaa--aaaacaatag-------aagttaactggacaatttttt-agaaatataccacagccaaaacaacataaagcagcccctctcctcataggga-----a---t-atcttaacca-atggagcagtaatattAAAGAC-AAAAAGAATAACTCATTTACTTCGGACAGTTCCTGGATTTGTGTGGTCCA-TTAACCTGCAATTAAGTCATGTGCAAAACCAAAA........................................................................................................................................ -s orcOrc1.KB317031 2637457 690 + 2653784 attaagcacacagaaaataatgtatagaacccagatgccaagtt--accaaa-ttatactgaaatgtttgcattgacatgggc-tgaaatg-ttagcattgtcatacctaatatatattctctctaca-gctagaattatatgggatgttgaattataatcagaataatgtttggtgagcaagaaaccacaacaggggaagttaaaagttaattggatgcattttt-agaaacatacctcagccaaaacagcttaggacagtctcccttacaatagga------a---taatcttgccca-atgaggtagtaagattgaagac-actaggagtgacttccctactttgaacagtttctggatttgcacagtcca-gcagccttctgtgaAGTCTTACGCAAGACCAGAAATCAGCTTATCATTTTAAGGTGACTCTCCG-TATCTCTTATCTA-ACTCTgcccCACAA-TGTTTAAGATGCT----------TGAGGAAGACGGTTCCTAGAG---GGATAGCTGTCCGTGGTCCTGAACCACTA -s panHod1.KE114623 3169388 509 - 5476734 gttaagcacac--aaaataatgtatagaaccaaggtgccaagtt--accaaa-ttatcttgcaatgtttgtagtgacatgggt-tgaaatgtttagcattgtcatgcctaatatattttctccctgca-gatggaattttatgggatgttgaatcataatcagaataatgtttggtgagcaagaaaccacaacaaagg-------aagttaattggatgcattttt-agaaacatgcctcagccaaaatagtgtgaggcagtctccctcacgaaggga------a---taatctagccCA-GTGAAGTGGTAAGATTGAATAC-ACTAGGAATGGCATCCCTACTTTGAATGGCTTCTGAATTTGCACAGTCCA-TTAGCCTTCTCTTAGGTTTCATGGAAGACTACATATCAACTTATCATTTTAAGGTGACTTTCTG-TATCTCTTCTCTA-ACTCTGACTTATAAAGGTTTAAGACCCT----------TGAGGAAGATGGGTCCTAGAG---GGATAGCTGTCCGTGGTTCTGAACCACTA -s bosTau8.chr16 46890323 511 - 81724687 actaagcacatggaaaataatgtatagaaccaaggtgccaagtt--accaaa-ttatgttgaaatgtttgtagtgacatgggt-tgaaatgtttagcattgtcatgcctaatatattttctccctgca-gatggaattttatgggatgttgaatcataatcagaataatgtttggtgagcaagaaaccacaacaaagg-------aagttaattggatgcattttt-agaagcatgcctcagccaaaatagcttgaggcagactccctcacgatggaa------a---taatctagccca-atgagGTGGTAAGATTGAATAC-ACTAGGAATGACATCCCTACTTCGAATGGTTTCTGAATTTGCACAGTCCA-TTAGCCTTCTCTTAGGTTTCATGGAAGACTAGAAATCAACTTATCATTTTAGGGTGACTCTCCG-TATCTCTTCTCTA-ACTCTGACTCACAAAGGTTTAAGACCCT----------TGAGGAGGATGGTTCCTAGAG---GGATAGCTGTCCATGGTTCTGAACCACTA -s oviAri3.chr12 46886277 509 - 79100223 gttaagcacac--aaaataatgtatagaaccaaggtgccaagtt--accaaa-ttatgttgcaatgtttgtagtgacatgggt-tggagtgtttagcattgtcatgcctaatatattttctccctgca-gatggaattttatgggatgttgaatcataatcagaataatgtttggtgagcaagaaaccacaacaaagg-------aagttaattggatgcattttt-agaaacatgcctcagccaaaatagcttgaggcagtctccctcacgatggga------a---taatctagccCA-GTGAAGTGGTAAGATTGAATAC-ACTAGGAATGGCGACCCTACTTTGAATGGTTTCTGAATTTGCACAGTCCA-TTAGCCTTCTCTTAGGTTTCATGGAAGACTAGAAATCAACTTATCATTTTAAGGTGACTTTCTG-TATCTCTTCTCTA-ACTCTGACTCACAAGGGTTTAAGACCCT----------TGAGGAAGATGGTTCCTAGAG---GGATAGCTGTCCGTGGTTCTGAACCACTA -s capHir1.chr16 45899140 509 - 77678508 gttaagcacac--aaaataatgtatagaaccaaggtgccaagtt--accaaa-ttatgttgcaatgtttgtagtgacatgggt-tgaaatgtttagcattgtcatgcctaatatattttctccctgca-gatggaattttatgggatgttgaatcataatcagaataatgtttggtgagcaagaaaccacaacaaagg-------aagttaattggatgcattttt-agaaacatgcctcagccaaaatagcttgaggcagtctccctcacgatggaa------a---taatctagccCA-GTGAAGTGGTAAGATTGAATAC-ACTAGGAATGGCGTCCCTACTTTGAATGGTTTCTGAATTTGCACAGTCCA-TTAGCCTTCTCTTAGGTTTCATGGAAGACTAGAAATCAACTTATCATTTTAAGGTGACTTTCTG-TATCTCTTCTCTA-ACTCTGACTCACAAAGGTTTAAGACCCT----------TGAGGAAGATGGTTCCTAGAG---GGATAGCTGTCCATGGTTCTGAACCACTA -s equCab2.chr30 28133151 490 - 30062385 tctaagcacacagagaataatgtatagaaccaaggggccaagtc--atcaaa-ttatgctgagacttctgcattgacatggac-tgaaatt-ttagcgttgtcatgcctagtacattctctccctgca-gatggaattatatgggatgctgaactgaaatcagaataatgtttggtgagcaaggaagcataacaagag-------aagttaattggataattTTTT-AGAAACATATCTCAGACAGAACAGCTTAAGTCAGTCTCTCTCACAACACAG------G---TAATCTTGCCCA------------------AAGAT-GCTAAGAATGACCTTTCTACTTTGGACAGTTTCTGGACTTGCACAGTCCA-TTAGCCTTCTGTTAAGTCTTATACAAGACCAGAAATCAATTTCTCATTTTAAAACGACTCTC------CCATTTTCTA-ACTCTAATTCACAA-T-TTCAAGACGCT----------CAACTCAGACGGTGCCTGCTG----GGGAGTTGTCCATGGTCCTGAACCACTA -s cerSim1.JH767803 8191412 498 + 10096343 actaagcacacagagaataatgtatagaaccatggtgccaagtt--atcaaa-ttatgctgagacttttgcagtgatatggacttgaaatg-ttagcattgtcatgcctcatacattctctccctgca-gatggaattaaacgggatgctgaactggaatcagaatgatgtttgatgagcaaggaaccacatcgaggg-------aagctaactggataaattttt-agaaacatgtctcagccaaaacagcttaaggtagtctccctcacaacagag------a---cagtcttgccCA------------------ACAACGGCCAAGGATGACCTCCCTACTTCGGAAAGTTTCTCGACTTGCACAGTCCA-TTAGTCTTCTATTAAGTCTTATACAAGACCAGAAACTGATAAATCATTTTAAGATGACTCTCCA-TGTCTCCTCTCTA-ACTCTGATTCGCAA-TGTTCAGGACACT----------CAACTAAGATACTGCCTAGGG----GGGAGCTGTCCGCAGTCCTGAACCACTG -s felCat8.chrF1 63230081 512 - 70119229 accaagaacatagagaacattgtatagaactaagatgccaagtc--atcaaa-ttatactgacatttttgcagt-acgtggac-tgaaatg-ttagcattgtcaagcctagcatattctctccctcta-gatggaattatatgaaatgctgaattataatcagaatagtgttttgtgagcaaagaatcacaacaaggg-------aagttaattggataaattttt-agaaacatgcctcagccaaaacagcttaagacagtcaccctcagagtaggg------a---taatcttgctcaagggggatagtaatattgaagAT-ACTAGAAATGACTCCTCAACTTTGGATAGTTTCTGGGCTTGAACAGTCTA-TTGGCCTTCTTATAAGTCTTAGGGAAGATCAGAAATCAGCTTGTCATCTTAAGGGGA--TGACA-TATCTGTTCTCCA-ACTCTGATTCACAC-TGTTCAAGACATT----------TAACCAAGAC-TTTTCTGGAGT--GGGGAACTGTCCGTGGTTCTGAACAACTA -s canFam3.chr7 34216009 506 + 80974532 actaagaacatagagaatattgtataaaactaagatgccaagtt--atcaaa-ttatactgcgattcttgcagt-acaggggc-tgaaatg-ttagcattgtcaagcctagtacattctctccctgta-catggagttatatgagttgctgaattataatcagaatagtgtttggtgagcaaagaatcacaacaaggg-------aagtt-attggataaATTTT--AGAAATGTGCCTTGGTCAAAATAGCTTAAGGCGGTCC------CAGGGGGT------ATATTAATCTTGCCCAGGGGGTATATTAA--TTGAAGAT-ACTAGGAATGGCCCTTCGACTTTGGACAGTTTCTGGGCTGGAACAGTCTA-TTGGCGGTTTTATAAGTCTTATGCAAGACCAGAAATCAATGTGTCATCCTAAGGGGACTCTCCA-TATCTGTTCTTTA-ACTCTGATT--CAG-TGTTCAAGACAT.----------TAACCAAAATGTTTCCTGGAGC--AGGGAGCTGTCCCTGGTTCTGAACAACTA -s musFur1.GL896953 6821010 523 + 11679101 actaagaacatagagaatattgtatagaactaagatgccaagtt--atcaaa-ttatactgagatttttgcagt-acatgggc-tgaaatg-ttagcattgtcgagcctagtacagtctctccc-ata-gctggaat--tatgagatgctgaattataatcagaatcgtgtttggtgagcaaagaatcacaacaaggg-------aagtcaattggataaattttt-agaaacgtgcctcagccaaaacagcttaagacaatccgcctcacagtaggg------a---taatcttgccCAGAGGGGATAGCAAGGTTGAAGAT-ACTAGGAATGTCCCCCGGACTTTGGACAGTTTCTGGGCTTGAACAGTCTG-ATGGCCTTTTACAAAGTCTTATGCAAGACCAGAAATCAATTTGTCATCCTAAGAGGACCCTCCA-TATCTGTTCTCTA-ACTCTGGTTCACAG-GGTTCAACATTC.----------AAGCAAGAGC-TGTCCTGGAGT--AGGGAGCTGTCCCTGGTTCTGAACAACCA -s odoRosDiv1.KB228994 454553 523 + 4135311 actaagaacatagagaatattgtatagaactaagatgccaagtt--atcaaa-ttatactgagatttttgcagt-acatgggc-tgaaatg-ttagcattgtcaagcctagcacattctttccctgta-gatggaattatatgaaatgctgaattataatcagaatagtgtttggtgagcaaagaatc---acaaggg-------aagttaattggataaatgtttaagaaacgtgcctcagccaaaacagctcaatacagtacccctcacaataggg------a---caatcttgcccaggggGGATATTAATGTTGAAGAT-ACTGAGAATGG-CCCTGGACTTTGGACAGTTTCTGGGCTTGAACAGTCTA-TTGGCCTTCTTATAAATCTTTTGCAAGACCAGAAATCAATTTGTCATCCTAAGGGAACTCTTCA-TATCTATTTTCTA-ATTCTGATTCACAG-TGTTCAAGATTC.----------AAACTGG-----TTCCTGGAGC--AGGGAGCTGTCCCTGGTTCTGAACAACTA -s pteAle1.KB030717 476346 508 + 4757641 actaagcacacagagaataaagtatagaaccaaggtgccaagtt--gtcaaatttatactgagatctttgcagtgacatgagc-tgaaatg-ttagcactgtcatgcctactacattttctccctgca-gatggaattatatgggacgctgaattataattagaataatg-ttggtgaacaaggaaccac-acaatgg-------aagttaattggataaaatttt-agaaacacatttcagcccaaacagagtaagacagcctcacttacaataggg------a---caatcttgctta-ccgggacAGACAGATTGA--AC-ACTAGGAATGACCGCTCTACATTGGACAGTTTCT-GACTTGCACAGTCCA-TTAGGCCTTTATTAAGTCTTATACAAGACCAGGAATCAACTTCTCATTTTAAGGAGACTCTCCA-TATCTCTTCTCTA-ACTCTACTTAACCA-TGTTCAAGATACT----------TGACCAAGATAGTTCCTGCAG---GGAGCACTCTCCA-GGTCCTGGACCACTA -s loxAfr3.scaffold_16 42660441 510 + 51904812 actaagctcacagataggaatgtatagaactaggttaccagggtacatcaaa--tatagtgagacttctgtagtcacatgggc-tgaaatg-tcagcattgtcatacctagcacattctctccctgaa-gatgaaattatatggggtgctgaattataataagaatagtatttggtaagtaaggaaccacaacaagga-------acgttaattggataatttttt-agaaaaatgtcttagtcaaaatagcttaaggctttctccttcaccataagg------a---taatcttgcc-a-acgaaacagtaatattgaagAT-GCTAGGAATGATCCCTCTAC-TAGGACTAGTCCTGGGCTTGCACAGCCCA-GAAGCCTTCAGTTAAGCCTTATACAAGACCAGAAGTCAGTTTACCATCTTAAATTCACTCTCTA-TATCTCTGTTCTA----CTATTGCACAG-TGCTCAAAACACT-GAAGCAGAATAACCACGATGTTTCCTGGACCA-TGTGTGCTGTCCATGGTGCTGAACCACTG -s triMan1.JH594645 4489022 508 + 20212048 actaagctcacagatataaatgtatggaactagggtaccagggt--atcaaa--tatagtaagacttctgtagtcacatggac-tgaaatg-tcagcattgtcatacctagcacattctacccctaaa-gatg-aattatatggaatgttgaattataatcagaataatgtttgataagtaaggaacgacaacaaggg-------a-gtcaattggataaattttt-agaaacataccttagtcaaaatagcttaaggcagtctccttcaccataagg------a---taatcttgcc-a-gtggaacagtaatattgtagac-actaggaatgacccctctac-ttggacaattcctggGCTTG--GAGTCCA-TTAGCCTTCAGTTAAGCCTTATACAAGATCAGAAGTCAGTTTATTATCTTAAGTTGACTCTCCA-TATCTCTCTTCTAGTCTGTGTTTCACAA-TACTCAAAACACT-GAAACAGCATAACCAAGATGTTTCCTGGAGCA-TGGGTGCTGTCCGTGGTTCTGAACCACTA -