9f5a3871b95f595b5a218f0d05395a8c72d58844 braney Tue Aug 25 12:57:10 2026 -0700 remove the bigBedOnePath fallback, leaving a single bigBed load path, refs #36940 bigBedOnePath has defaulted to on since v492 and the setting has been removed from the hg.conf of the RR, Euro, Asia and hgwbeta. Drop the check and the code it guarded at all four sites: the field-count default in bigBedAddLinkedFeaturesFromExt, the method setup in commonBigBedMethods, the bedSize default in bigBedClick, and the bigBed case in hgc. The two branches in the hgc case differed only in a minimum the surviving path does not want. complexBedMethods lost its only isBigBed=TRUE caller with that branch, so drop the parameter. Retire the setting from the hg.conf catalog and its gate backlog, and repair the two hgc.c citations whose line numbers this commit shifted, refs #37925. Verified pixel-identical: 14 scenarios rendered before and after, covering the four QA sessions on the ticket plus mm10 knownGene, dbSnp155, rmsk, encRegTfbsClustered, clinvar and tandemDups. All AE=0. diff --git src/hg/utils/hgConfCatalog/hgConfGateBacklog.txt src/hg/utils/hgConfCatalog/hgConfGateBacklog.txt index d7c51e95200..09ac1baeba1 100644 --- src/hg/utils/hgConfCatalog/hgConfGateBacklog.txt +++ src/hg/utils/hgConfCatalog/hgConfGateBacklog.txt @@ -1,41 +1,40 @@ # hgConfGateBacklog.txt - the hg.conf release gates already known to be overdue # for deletion or stalled in QA. Refs #37925. # # hgConfCatalog.py --sunset-new reports only the gates that are not in here, so # this is what lets the weekly build's wrap-up say "two gates went overdue this # release" instead of reprinting the whole standing list every three weeks. # Regenerate with --update-baseline and read the diff before committing: a name # arriving is a new gate nobody sunset, and a name leaving means somebody # actually deleted a flag, which is the outcome the whole exercise is for. # # The first version of this file was accepted wholesale, as a snapshot of the # backlog on the day the report learned to tell new from standing. So a name # being in here is not evidence that anybody reviewed it; only the ones added # since, which arrive a few at a time in a reviewable diff, carry that weight. # # Fields: name, state (overdue or stalled), and the release it was first # reported at. hgConfCatalog.py --sunset prints the full list with dates. alwaysItemRgb overdue v501 # flipped v466 autoBlatBigPsl stalled v501 # added v482 -bigBedOnePath overdue v501 # flipped v492 blatShowLocus stalled v501 # added v483 canDoHgcInPopUp overdue v501 # flipped v492 canDupTracks overdue v501 # flipped v443 canSnake overdue v501 # flipped v467 gcOnTheFly overdue v501 # flipped v496 genarkLiftOver stalled v501 # added v484 greyBarIcons overdue v501 # flipped v492 groupDropdown stalled v501 # added v489 hgHubConnect.validateHub overdue v501 # flipped v427 hgSession.shortLink stalled v501 # added v374 mergeRecommended overdue v501 # flipped v467 newBotDelay overdue v501 # flipped v492 showDownloadUi overdue v501 # flipped v467 showHubApiKey stalled v501 # added v473 showIgv stalled v501 # added v487 showMouseovers stalled v501 # added v446 showTutorial overdue v501 # flipped v466 storeUserFiles stalled v501 # added v447 svgBarChart overdue v501 # flipped v428 trackHubsCanAddGroups overdue v501 # flipped v492 useBlatBigPsl overdue v501 # flipped v348