Commits for chmalee

v478_base to v479_preview (2025-02-24 to 2025-03-03) v479

1f954876a8847da234e0c89b3b43390b40c6ca4e Tue Feb 25 10:45:31 2025 -0800

• Special handle the parentDir setting during uploads by cgi-encoding the components of parentDir but leaving the slash characters in place. This allows hubtools uploads to preserve the filesystem layout on the host on our end, but prevent writing of files outside of the users hubspace directory. Any '..' characters in the parentDir are simply ignored. This commit also fixes some other hubtools related UI bugs, like preventing infinite recursion when doing a row select, displaying file names unencoded, and fixing a bug when deleting subdirectories, refs #31058
  • src/hg/hgHubConnect/hooks/hooklib.c - lines changed 26, context: html, text, full: html, text
  • src/hg/hgHubConnect/hooks/hooklib.h - lines changed 4, context: html, text, full: html, text
  • src/hg/hgHubConnect/hooks/pre-finish.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgHubConnect/trackHubWizard.c - lines changed 33, context: html, text, full: html, text
  • src/hg/js/hgMyData.js - lines changed 34, context: html, text, full: html, text
  • src/hg/lib/userdata.c - lines changed 7, context: html, text, full: html, text

e03fbe234ac861ea3b1831f01a18b36aea53a58d Tue Feb 25 11:58:38 2025 -0800

• Make font-size of breadcrumb text larger, make the final breadcrumb not underlined since it cannot be clicked, make the final breadcrumb not clickable, refs ##31058
  • src/hg/htdocs/style/hgMyData.css - lines changed 1, context: html, text, full: html, text
  • src/hg/js/hgMyData.js - lines changed 14, context: html, text, full: html, text

f4811acb1836d4a91ab6d2189aff8f1d7a438d1b Tue Feb 25 15:10:49 2025 -0800

• Remove hubSpace hub from the cart when deleting a hub.txt, refs #31058
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgHubConnect/trackHubWizard.c - lines changed 14, context: html, text, full: html, text
  • src/hg/inc/userdata.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/userdata.c - lines changed 11, context: html, text, full: html, text

ebc825e893d3ecab0e4827d2d5f2e5af532d34f6 Wed Feb 26 09:49:53 2025 -0800

• Add missing chromAlias calls to hgSearch, refs #34437
  • src/hg/hgSearch/hgSearch.c - lines changed 3, context: html, text, full: html, text

541933ca6a407a10621c3110fb0873529d78e11e Wed Feb 26 12:42:38 2025 -0800

• Don't error out if trying to do a hubspace re-upload of a file if the upload is coming from hubtools. Assume hubtools users want to overwrite existing files, ref Max email
  • src/hg/hgHubConnect/hooks/pre-finish.c - lines changed 3, context: html, text, full: html, text