Commits for chmalee

v499_base to v500_preview (2026-06-01 to 2026-06-08) v500

ca23d9f5054fc863beb18d7ef4919b550b2f8d9c Mon Jun 1 10:45:37 2026 -0700

• Allow dot in genome names in hubspace uploads, refs #37665
  • src/hg/hgHubConnect/hooks/pre-finish.c - lines changed 4, context: html, text, full: html, text
  • src/hg/js/hgMyData.js - lines changed 4, context: html, text, full: html, text

48b00fd6aaa85aee01dc7efb2c68374bf980c1a2 Mon Jun 1 15:17:50 2026 -0700

• Fix not html encoding hgPublic sessions output of username, sessionName, db, and searchStr fields, refs #37663
  • src/hg/hgPublicSessions/hgPublicSessions.c - lines changed 5, context: html, text, full: html, text

0df5f6317fd6e0033a31aaf56b928f574823075c Wed Jun 3 11:06:54 2026 -0700

• Recommended track sets now can load from a file in htdocs/data/recTrackSets/db/sessionName. The settings are overlayed onto the current cart and no reload of the page is required anymore, refs #37281
  • src/hg/hgTracks/hgTracks.c - lines changed 14, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTracks/recTrackSets.c - lines changed 51, context: html, text, full: html, text
  • src/hg/inc/cart.h - lines changed 7, context: html, text, full: html, text

7d74f16b6443b2155b8638052919ed4952a6e786 Wed Jun 3 13:00:02 2026 -0700

• Fix table schema button for myVariants tracks, no redmine
  • src/hg/hgTables/schema.c - lines changed 12, context: html, text, full: html, text

7d56cd6635651dfd4c9926d062d92ad7b65a3e80 Wed Jun 3 14:52:52 2026 -0700

• More myVariants changes: make the share to accept a comma-sep list of usernames, allow both the read/edit flag and the usernames setting to be editable after creation. When editing usernames, add a confirmation if the field is left blank that this will make the share viewable/editable by anyone with the link, refs #33808
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/myVariantsTrack.c - lines changed 109, context: html, text, full: html, text
  • src/hg/inc/myVariantsShare.h - lines changed 17, context: html, text, full: html, text
  • src/hg/js/hui.js - lines changed 115, context: html, text, full: html, text
  • src/hg/lib/myVariants.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/myVariantsShare.as - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/myVariantsShare.c - lines changed 80, context: html, text, full: html, text
  • src/hg/lib/myVariantsShare.sql - lines changed 1, context: html, text, full: html, text

7a2dbf6721582d73ac9665d9231ffd7fdb703d3a Wed Jun 3 15:04:56 2026 -0700

• Add a link to create a myVariants item to the menu bar under My Data, refs #33808
  • src/hg/js/hgTracks.js - lines changed 23, context: html, text, full: html, text

40b4fc89ec72c22cae51bf9a8b9a7e8dd887eebf Thu Jun 4 15:34:16 2026 -0700

• Show MANE-relative HGVS terms on myVariants SNV detail pages, refs #33808 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
  • src/hg/hgc/myVariantsClick.c - lines changed 108, context: html, text, full: html, text
  • src/hg/inc/hgHgvs.h - lines changed 9, context: html, text, full: html, text
  • src/hg/lib/hgHgvs.c - lines changed 17, context: html, text, full: html, text

d8900846fdae9183808ccd57864191ee48fca00e Fri Jun 5 10:07:25 2026 -0700

• myVariants: fix item display and HGVS gene-track lookup on GenArk hubs, refs #33808 Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
  • src/hg/hgTracks/myVariantsTrack.c - lines changed 10, context: html, text, full: html, text
  • src/hg/inc/trackHub.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hgHgvs.c - lines changed 10, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 15, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 15, context: html, text, full: html, text

bd91a935679eda68e6bf59ee40e480f3cbd0f6e3 Fri Jun 5 12:48:09 2026 -0700

• Fix hubSpace genome selection committing the wrong genome to hub.txt, refs #37713 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
  • src/hg/js/hgMyData.js - lines changed 29, context: html, text, full: html, text

418682bd5f74d1fbf48dc2527b5c12cbf8d22109 Fri Jun 5 12:52:24 2026 -0700

• Merge branch 'hubSpaceGenomeNameFix'

3b6659d987c9b7afd53828faf7a6a3487bbc751a Fri Jun 5 13:17:35 2026 -0700

• Update where recTrackSets pulls the .tab files from, refs #32768
  • src/hg/hgTracks/recTrackSets.c - lines changed 3, context: html, text, full: html, text