Commits for galt

v491_base to v492_preview (2025-11-24 to 2025-12-01) v492

5ed8f560efb5af18673ae76180e24ec493698cb2 Thu Nov 20 17:07:25 2025 -0800

• Fixes pdf output problem. We set hgFindMatches = NULL for pdf output to suppress the item search highlight. But loading in bigBedTrack and squishPackyMode both depend on that search term, so we cannot just set it to NULL. A copy of it called origHgFindMatches exists and is available to those routines that need the original search value.
  • src/hg/hgTracks/bigBedTrack.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text

4140d0e2412d8edb63d1aaac196f6c98612f3328 Fri Nov 21 16:52:25 2025 -0800

• Add hgTables Summary and intersection buttons for knownCanonical. refs #rm36524
  • src/hg/hgTables/mainPage.c - lines changed 4, context: html, text, full: html, text

1737fc2d9d461163f9225eb8a47f23ba9510eafc Mon Nov 24 12:56:55 2025 -0800

• Merge branch 'rm36524-missing-hgTables-Summary-and-intersection-buttons'

7412238abe94bb147ccb3570d4766d8bc063dbfe Mon Nov 24 13:05:48 2025 -0800

• debug cleanup
  • src/hg/hgTables/mainPage.c - lines changed 1, context: html, text, full: html, text

3ff535495d9ea1f9ac93938227610e958f2a0714 Mon Nov 24 13:21:22 2025 -0800

• Merge branch 'rm36738-pdf-output-does-not-match-because-hgFindMatches-is-NULL'

4165c886d31e4e347d85e0fc134fc085af2bf31f Mon Nov 24 13:51:31 2025 -0800

• Fixes the concern where externally loaded non-local-hubs might want to use protected local bigDataUrls such as /gbdb/hg38/bbi/hgmd.bb, which will now be forbidden when loading the tracks. Tells the user which setting has the invalid url and that such usage is not allowed. It also supports udc.localDir setting for GBIB and mirrors. As usual that should be set carefully as mentioned in the ticket, and also provides a way to test with and without udc.localDir allowing paths. refs #34544
  • src/hg/lib/trackHub.c - lines changed 11, context: html, text, full: html, text