df99c448f8e0386bb718da0044b22752fc145713
gperez2
  Thu Jun 4 00:15:12 2026 -0700
Updating ENCODE4 Regulation labels and description pages for hg38 and mm10. refs #34923

- Capitalized 363 hg38 Layered organ shortLabels and shortened the over-length TF rPeaks and Indiv. composite longLabels; updated the mm10 TF ChIP container longLabel.
- TF rPeaks: added the missing SHOX2 to filterValues.factor (now 912), and updated "911 factors"/"2,502 experiments" to "912"/"2,509".
- Supertrack pages: changed Layered bullets from "highlights" to "displays", reworded the histone and CTCF bullets, updated the default-organ note, and updated stale hg38 organ counts to 38/41/26/38/36.
- Updated the TF ChIP facet name "Tf" -> "TF" on both description pages.
- Makedoc: updated hg38 "911-factor" -> "912-factor" and mm10 RNA-seq Unstranded "26" -> "8".

diff --git src/hg/makeDb/doc/hg38/encode4.regulation.txt src/hg/makeDb/doc/hg38/encode4.regulation.txt
index 2ff8ad259b4..ea08db6f75e 100644
--- src/hg/makeDb/doc/hg38/encode4.regulation.txt
+++ src/hg/makeDb/doc/hg38/encode4.regulation.txt
@@ -89,31 +89,31 @@
 # All S3 URLs verified accessible via bigWigInfo/bigBedInfo (0 failures).
 
 ##############################################################################
 # Step 4: Generate multiWig trackDb stanzas
 ##############################################################################
 
 # The multiWig organ-averaged tracks (H3K27ac, DNase, ATAC, H3K4me3, CTCF, Txn)
 # are generated from the hub.txt and assembled into the main wgEncodeReg4.ra.
 
 cd /hive/users/lrnassar/claude/RM34923
 python3 kent/src/hg/makeDb/scripts/encode4regulation/generate_multiwig_ra.py \
     > multiwig_output.ra
 
 # The output was manually integrated into wgEncodeReg4.ra along with:
 #   - SuperTrack definition (priority 0.9, group=regulation)
-#   - TF rPeak track (bigBed 12+ with decorator, 911-factor filterValues)
+#   - TF rPeak track (bigBed 12+ with decorator, 912-factor filterValues)
 #   - Include directives for the 3 bigComposite files
 # The main file is hand-maintained:
 #   kent/src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4.ra (~3,461 lines)
 
 # multiWig track details:
 #   wgEncodeReg4MarkH3k27ac — full visibility (priority 1.4)
 #   wgEncodeReg4Dnase       — hidden (priority 1.1)
 #   wgEncodeReg4Atac        — hidden (priority 1.2)
 #   wgEncodeReg4MarkH3k4me3 — hidden (priority 1.3)
 #   wgEncodeReg4MarkCtcf    — hidden (priority 1.5)
 #   wgEncodeReg4Txn         — hidden (priority 1.6)
 #   wgEncodeReg4TfPeaks     — hidden (priority 1.7)
 
 # Each multiWig has tissue-only subtracks first, then all-biosamples subtracks.
 # Tissue-only subtracks use tp{Organ}{Assay}.bw gbdb symlinks pointing to