5239d7622b288c5d897ca855808844b16c183833
gperez2
  Tue Jun 10 16:00:17 2025 -0700
Releasing and announcing the EVA Release 7, refs #35504

diff --git src/hg/makeDb/trackDb/evaSnp.ra src/hg/makeDb/trackDb/evaSnp.ra
index 6fde9012781..8e68a65ed9f 100644
--- src/hg/makeDb/trackDb/evaSnp.ra
+++ src/hg/makeDb/trackDb/evaSnp.ra
@@ -1,22 +1,23 @@
 track evaSnpContainer
 shortLabel EVA SNP
 longLabel Short Genetic Variants from European Variant Archive
 group varRep
 type bigBed 9 +
 compositeTrack on
 visibility dense
+pennantIcon Updated red ../goldenPath/newsarch.html#061125 "Updated June 11, 2025"
 
 track evaSnp
 shortLabel EVA SNP Release 3
 longLabel Short Genetic Variants from European Variant Archive Release 3
 type bigBed 9 +
 parent evaSnpContainer off
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
@@ -71,36 +72,61 @@
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 
 searchTable evaSnp5
 searchType bigBed
 searchMethod exact
 padding 20
 
 track evaSnp6
 shortLabel EVA SNP Release 6
 longLabel Short Genetic Variants from European Variant Archive Release 6
 type bigBed 9 +
-parent evaSnpContainer on
-visibility dense
+parent evaSnpContainer off
 itemRgb on
 mouseOver $ref>$alt $ucscClass $aaChange
 bigDataUrl /gbdb/$D/bbi/evaSnp6.bb
 url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 html evaSnpContainer
 
 searchTable evaSnp6
 searchType bigBed
 searchMethod exact
 padding 20
+
+track evaSnp7
+shortLabel EVA SNP Release 7
+longLabel Short Genetic Variants from European Variant Archive Release 7
+type bigBed 9 +
+parent evaSnpContainer on
+visibility dense
+itemRgb on
+mouseOver $ref>$alt $ucscClass $aaChange
+bigDataUrl /gbdb/$D/bbi/evaSnp7.bb
+url https://www.ebi.ac.uk/eva/?variant&accessionID=$$
+filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
+filterLabel.varClass Variant class from EVA SO term
+filterLabel.ucscClass Functional effect per UCSC Variant Annotation
+filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
+filterType.ucscClass multipleListOnlyOr
+filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
+filterLabel.itemRgb General variant types by color grouping
+maxWindowCoverage 250000
+maxItems 1000000
+html evaSnpContainer
+
+searchTable evaSnp7
+searchType bigBed
+searchMethod exact
+padding 20