fd5b9c605c39c5b83b630926419897d9dbd69c37 gperez2 Fri Jan 9 14:22:19 2026 -0800 Adding to the makedoc, the gnomAD v4.1 CNV track update with the gnomad.v4.1.cnv.all.bed data. Also, updated the hgdownload URL in the track description, refs #36837 diff --git src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html index 44a994b5efc..283720e87ea 100644 --- src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html +++ src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html @@ -90,31 +90,31 @@ <p> The raw data can be explored interactively with the <a href="../hgTables">Table Browser</a>, or the <a href="../hgIntegrator">Data Integrator</a>. For automated access, this track, like all others, is available via our <a href="../goldenPath/help/api.html">API</a>. However, for bulk processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed file that can be downloaded from the <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg19/gnomAD/structuralVariants/">download server</a>. The exact filenames can be found in the track configuration file. Annotations can be converted to ASCII text by our tool <code>bigBedToBed</code> which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, for example:</p> <pre> -bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gnomAD/v4/cnv/gnomad.v4.1.cnv.non_neuro_controls.bb -chrom=chr6 -start=0 -end=1000000 stdout +bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gnomAD/v4/cnv/gnomad.v4.1.cnv.all.bb -chrom=chr6 -start=0 -end=1000000 stdout </pre> <p> Please refer to our <A HREF="https://groups.google.com/a/soe.ucsc.edu/forum/?hl=en&fromgroups#!search/gnomAD" target="_blank">mailing list archives</a> for questions and example queries, or our <a HREF="../FAQ/FAQdownloads.html#download36" target="_blank">Data Access FAQ</a> for more information.</p> <p> More information about using and understanding the gnomAD data can be found in the <a target="_blank" href="https://gnomad.broadinstitute.org/faq">gnomAD FAQ</a> site. </p>