c7a78bd7342f93f63acaf6759ca7077b9caaa64c gperez2 Wed Jul 22 22:05:43 2026 -0700 Announcing the ENCODE4 cCREs and ENCODE4 Regulation tracks. Adding pennantIcons on mm10 cCREs/cCREregistry/coreCcres and hg38/mm10 ENCODE4 Regulation supertracks, making ENCODE4 Regulation show by default and adding a deprecation pennantIcon on ENCODE3 Regulation. Renaming ENCODE Regulation to ENCODE3 Regulation on hg38 and removing the separate wgEncodeReg.alpha.ra file. refs #37845 refs #34923 refs #37131 diff --git src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.alpha.ra src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.alpha.ra deleted file mode 100644 index a0bd858ee00..00000000000 --- src/hg/makeDb/trackDb/human/hg38/wgEncodeReg.alpha.ra +++ /dev/null @@ -1,407 +0,0 @@ -# ENCODE Integrated Regulation Track (Chris Eisenhart, Kate) - -track wgEncodeReg -superTrack on -shortLabel ENCODE3 Regulation -longLabel Integrated Regulation from ENCODE3 -group regulation -priority 1 -canPack On -pennantIcon snowflake.png /goldenPath/newsarch.html#NNN "Please see the ENCODE4 Regulation track for the latest data. See news archive for details." - -include wgEncodeRegDnase.ra alpha - -track TFrPeakClusters -shortLabel TF rPeak Clusters -longLabel Transcription Factor Representative Peak (rPeak) Clusters (912 factors in 1152 biosamples) from ENCODE 4 -type bigBed 12 + -parent wgEncodeReg -itemRgb on -spectrum on -scoreMin 1 -scoreMax 1000 -visibility hide -mouseOverField factor -labelFields factor -bigDataUrl /gbdb/hg38/bbi/ENCODE4/TFrPeakClusters.bb -decorator.default.bigDataUrl /gbdb/hg38/bbi/ENCODE4/TFrPeakClustersDecorator.bb -detailsDynamicTable json_table|experiments support this rPeak -urls exp="https://www.encodeproject.org/experiments/$$/" cCRE="https://screen.wenglab.org/search/?q=$$&assembly=GRCh38" factor="https://www.factorbook.org/tf/human/$$/function" -html TFrPeakClusters.html -filterValues.factor ADNP,AFF1,AFF4,AGO1,AGO2,AHDC1,AHR,AKAP8,AKNA,ARHGAP35,ARID1B,ARID2,ARID3A,ARID4A,ARID4B,ARID5B,ARNTL,ARNT,AR,ASH1L,ASH2L,ATF1,ATF2,ATF3,ATF4,ATF5,ATF6,ATF7,ATOH8,BACH1,BATF,BCL11A,BCL11B,BCL3,BCL6B,BCL6,BCLAF1,BCOR,BDP1,BHLHE40,BMI1,BNC2,BRCA1,BRCA2,BRD4,BRD9,C11orf30,CAMTA2,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX5,CBX8,CC2D1A,CCAR2,CCNT2,CDC5L,CEBPA,CEBPB,CEBPD,CEBPG,CEBPZ,CERS6,CGGBP1,CHAMP1,CHD1,CHD2,CHD4,CHD7,CLOCK,CREB1,CREB3L1,CREB3,CREB5,CREM,CSDC2,CSDE1,CSRNP3,CTBP1,CTBP2,CTCFL,CTCF,CUX1,DACH1,DBP,DDIT3,DDX20,DEAF1,DEK,DIDO1,DLX6,DMAP1,DMTF1,DNMT1,DNMT3B,DPF2,DR1,DRAP1,DZIP1,E2F1,E2F2,E2F3,E2F4,E2F5,E2F6,E2F7,E2F8,E4F1,EBF1,EEA1,EED,EGR1,EGR2,EHF,EHMT2,ELF1,ELF2,ELF3,ELF4,ELK1,ELK4,EMX1,EP300,EP400,ERF,ERG,ESR1,ESRRA,ESRRG,ETS1,ETV1,ETV4,ETV5,ETV6,EZH2phosphoT487,EZH2,FEZF1,FIP1L1,FOSB,FOSL1,FOSL2,FOS,FOXA1,FOXA2,FOXA3,FOXC1,FOXF2,FOXJ2,FOXJ3,FOXK1,FOXK2,FOXM1,FOXO1,FOXO4,FOXP1,FOXP2,FOXP4,FOXS1,FUBP1,FUBP3,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATAD1,GATAD2A,GATAD2B,GFI1B,GFI1,GLI2,GLI4,GLIS1,GLIS2,GLIS3,GLYR1,GMEB1,GMEB2,GPN1,GTF2A2,GTF2B,GTF2E2,GTF2F1,GTF2I,GTF3A,GTF3C2,GZF1,HBP1,HCFC1,HDAC1,HDAC2,HDAC3,HDAC6,HDAC8,HDGF,HES1,HES2,HES4,HEYL,HHEX,HIC1,HIC2,HINFP,HIVEP1,HLF,HLTF,HMBOX1,HMG20A,HMG20B,HMGA2,HMGN3,HMGXB3,HMGXB4,HNF1A,HNF1B,HNF4A,HNF4G,HNRNPH1,HNRNPK,HNRNPLL,HNRNPL,HNRNPUL1,HOMEZ,HOXA3,HOXA5,HOXA7,HOXB13,HOXB5,HOXD1,HSF1,HSF2,HSF4,ID3,IKZF1,IKZF2,IKZF3,IKZF4,IKZF5,ILF3,INSM2,IRF1,IRF2,IRF3,IRF4,IRF5,IRF9,ISL1,ISL2,ISX,JRK,JUNB,JUND,JUN,KAT2B,KAT7,KAT8,KDM1A,KDM2A,KDM2B,KDM3A,KDM4A,KDM4B,KDM5A,KDM5B,KDM6A,KHSRP,KIAA2018,KLF10,KLF11,KLF12,KLF13,KLF16,KLF17,KLF1,KLF4,KLF5,KLF6,KLF7,KLF8,KLF9,KMT2A,KMT2B,L3MBTL2,LARP7,LBX2,LCORL,LCOR,LEF1,LIN54,MAF1,MAFF,MAFG,MAFK,MAX,MAZ,MBD1,MBD2,MBD4,MED13,MED1,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MGA,MIER1,MIER2,MIER3,MITF,MIXL1,MLLT1,MLXIP,MLX,MNT,MNX1,MSX2,MTA1,MTA2,MTA3,MTF1,MTF2,MXD1,MXD3,MXD4,MXI1,MYBL2,MYB,MYC,MYNN,MYRF,MZF1,NAIF1,NANOG,NBN,NCOA1,NCOA2,NCOA3,NCOA6,NCOR1,NEUROD1,NFAT5,NFATC1,NFATC3,NFATC4,NFE2L1,NFE2L2,NFE2,NFIA,NFIB,NFIC,NFIL3,NFIX,NFKB2,NFKBIZ,NFRKB,NFXL1,NFYA,NFYB,NFYC,NKRF,NKX3-1,NONO,NR0B2,NR1H2,NR2C1,NR2C2,NR2E3,NR2F1,NR2F2,NR2F6,NR3C1,NR4A1,NR5A1,NR5A2,NRF1,NRL,NUFIP1,ONECUT1,ONECUT2,OSR2,OTX2,OVOL1,OVOL3,PAF1,PATZ1,PAWR,PAX5,PAX8,PAXIP1,PBX1,PBX2,PBX3,PCBP1,PCBP2,PHB2,PHB,PHF20,PHF21A,PHF5A,PHF8,PITX1,PKNOX1,PLSCR1,PML,POGZ,POLR2AphosphoS2,POLR2AphosphoS5,POLR2A,POLR2B,POLR2G,POLR2H,POLR3A,POU2F2,POU5F1,POU6F1,PPARG,PRDM10,PRDM15,PRDM1,PRDM4,PRDM6,PRPF4,PRRX2,PTBP1,PTRF,PTTG1,PYGO2,RAD21,RAD51,RARA,RARB,RARG,RB1,RBAK,RBBP5,RBFOX2,RBM14,RBM22,RBM25,RBM39,RBPJ,RCOR1,RCOR2,RELA,RELB,REPIN1,RERE,REST,RFX1,RFX3,RFX5,RFXANK,RFXAP,RLF,RNF219,RNF2,RORA,RREB1,RUNX1,RUNX3,RXRA,RXRB,SAFB2,SAFB,SAP130,SAP30,SATB2,SCRT1,SCRT2,SETDB1,SFPQ,SHOX2,SIN3A,SIN3B,SIRT6,SIX1,SIX4,SIX5,SKIL,SKI,SMAD1,SMAD3,SMAD4,SMAD5,SMAD9,SMARCA4,SMARCA5,SMARCB1,SMARCC1,SMARCC2,SMARCE1,SMC3,SNAI1,SNAI2,SNAPC4,SNIP1,SOX13,SOX18,SOX5,SOX6,SP110,SP140L,SP1,SP2,SP3,SP4,SP5,SP7,SPDEF,SPEN,SPI1,SREBF1,SREBF2,SRF,SRSF1,SRSF3,SRSF4,SSRP1,STAG1,STAT1,STAT3,STAT5A,STAT5B,STAT6,SUPT5H,SUZ12,TAF15,TAF1,TAF7,TAF9B,TAL1,TARDBP,TBL1XR1,TBPL1,TBP,TBX18,TBX21,TBX2,TBX3,TCF12,TCF15,TCF3,TCF4,TCF7L2,TCF7,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP4,TFCP2L1,TFCP2,TFDP1,TFDP2,TFE3,TGIF2,THAP11,THAP12,THAP1,THAP7,THAP8,THAP9,THRAP3,THRA,THRB,TIGD3,TIGD6,TOE1,TOX2,TOX,TP53,TP63,TRAFD1,TRIM22,TRIM24,TRIM25,TRIM28,TSC22D2,TSHZ1,TSHZ2,U2AF1,U2AF2,UBTF,USF1,USF2,VEZF1,WIZ,WRNIP1,WT1,XBP1,XRCC5,YBX1,YEATS2,YEATS4,YY1,YY2,ZBED1,ZBED4,ZBED5,ZBTB10,ZBTB11,ZBTB12,ZBTB14,ZBTB17,ZBTB1,ZBTB20,ZBTB21,ZBTB24,ZBTB25,ZBTB26,ZBTB2,ZBTB33,ZBTB37,ZBTB38,ZBTB39,ZBTB3,ZBTB40,ZBTB42,ZBTB43,ZBTB44,ZBTB46,ZBTB48,ZBTB49,ZBTB4,ZBTB5,ZBTB6,ZBTB7A,ZBTB7B,ZBTB8A,ZBTB9,ZC3H10,ZC3H11A,ZC3H4,ZC3H8,ZCCHC11,ZEB1,ZEB2,ZFHX2,ZFP14,ZFP1,ZFP36L2,ZFP36,ZFP37,ZFP3,ZFP41,ZFP64,ZFP69B,ZFP82,ZFP91,ZFX,ZFY,ZGPAT,ZHX1,ZHX2,ZHX3,ZIC2,ZIK1,ZKSCAN1,ZKSCAN5,ZKSCAN8,ZMAT3,ZMIZ1,ZMYM2,ZMYM3,ZNF101,ZNF10,ZNF121,ZNF124,ZNF12,ZNF133,ZNF134,ZNF138,ZNF140,ZNF142,ZNF143,ZNF146,ZNF148,ZNF157,ZNF165,ZNF16,ZNF175,ZNF17,ZNF180,ZNF184,ZNF189,ZNF18,ZNF197,ZNF202,ZNF205,ZNF207,ZNF20,ZNF215,ZNF217,ZNF219,ZNF221,ZNF223,ZNF224,ZNF225,ZNF230,ZNF232,ZNF234,ZNF239,ZNF24,ZNF251,ZNF256,ZNF257,ZNF25,ZNF263,ZNF264,ZNF266,ZNF26,ZNF274,ZNF276,ZNF280A,ZNF280B,ZNF280D,ZNF281,ZNF282,ZNF296,ZNF2,ZNF30,ZNF311,ZNF316,ZNF317,ZNF318,ZNF319,ZNF324,ZNF329,ZNF331,ZNF333,ZNF335,ZNF337,ZNF33A,ZNF33B,ZNF341,ZNF343,ZNF34,ZNF350,ZNF354B,ZNF354C,ZNF362,ZNF366,ZNF367,ZNF383,ZNF384,ZNF391,ZNF394,ZNF395,ZNF397,ZNF398,ZNF3,ZNF407,ZNF414,ZNF416,ZNF41,ZNF423,ZNF426,ZNF430,ZNF431,ZNF433,ZNF441,ZNF444,ZNF445,ZNF446,ZNF449,ZNF44,ZNF451,ZNF460,ZNF462,ZNF483,ZNF484,ZNF485,ZNF488,ZNF48,ZNF490,ZNF501,ZNF503,ZNF507,ZNF510,ZNF511,ZNF512B,ZNF512,ZNF513,ZNF518A,ZNF526,ZNF529,ZNF530,ZNF532,ZNF543,ZNF547,ZNF548,ZNF549,ZNF550,ZNF552,ZNF555,ZNF556,ZNF557,ZNF558,ZNF561,ZNF569,ZNF570,ZNF572,ZNF574,ZNF576,ZNF579,ZNF580,ZNF583,ZNF584,ZNF585B,ZNF589,ZNF592,ZNF596,ZNF598,ZNF600,ZNF605,ZNF607,ZNF608,ZNF609,ZNF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-filterType.factor multipleListOr - - track wgEncodeRegTxn - container multiWig - noInherit on - type bigWig 0 65500 - parent wgEncodeReg - shortLabel Transcription - longLabel Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE - visibility hide - maxHeightPixels 100:30:11 - showSubtrackColorOnUi on - aggregate transparentOverlay - transformFunc LOG - viewLimits 0:8 - priority 1.1 - dragAndDrop subTracks - allButtonPair on - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled - shortLabel GM12878 - longLabel Transcription of GM12878 cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 1 - color 255,128,128 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqH1hescR2x75Il200SigPooled - shortLabel H1-hESC - longLabel Transcription of H1-hESC cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 2 - color 255,212,128 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqHelas3R2x75Il200SigPooled - shortLabel HeLa-S3 - longLabel Transcription of HeLa-S3 cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 3 - color 227,255,128 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqHepg2R2x75Il200SigPooled - shortLabel HepG2 - longLabel Transcription of HepG2 cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 4 - color 128,255,149 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqHsmmR2x75Il200SigPooled - shortLabel HSMM - longLabel Transcription of HSMM cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 5 - color 128,255,242 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled - shortLabel HUVEC - longLabel Transcription of HUVEC cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 6 - color 128,199,255 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqK562R2x75Il200SigPooled - shortLabel K562 - longLabel Transcription of K562 cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 7 - color 149,128,255 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqNhekR2x75Il200SigPooled - shortLabel NHEK - longLabel Transcription of NHEK cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 8 - color 227,128,255 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled - shortLabel NHLF - longLabel Transcription of NHLF cells from ENCODE - parent wgEncodeRegTxn - type bigWig 0 65535 - priority 9 - color 255,128,212 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1 - container multiWig - noInherit on - type bigWig 0 10000 - superTrack wgEncodeReg hide - shortLabel Layered H3K4Me1 - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE - visibility hide - viewLimits 0:50 - maxHeightPixels 100:30:11 - aggregate transparentOverlay - showSubtrackColorOnUi on - priority 1.2 - dragAndDrop subtracks - allButtonPair on - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - #track wgEncodeRegMarkH3k4me1Gm12878 - track wgEncodeBroadHistoneGm12878H3k4me1StdSig - shortLabel GM12878 - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 255,128,128 - type bigWig 0 5199 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1H1hesc - table wgEncodeBroadHistoneH1hescH3k4me1StdSig - shortLabel H1-hESC - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on H1-hESC Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 255,212,128 - type bigWig 0 8355 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1Hsmm - table wgEncodeBroadHistoneHsmmH3k4me1StdSig - shortLabel HSMM - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 120,235,204 - type bigWig 0 6265 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1Huvec - table wgEncodeBroadHistoneHuvecH3k4me1StdSig - shortLabel HUVEC - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 128,212,255 - type bigWig 0 4666 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1K562 - table wgEncodeBroadHistoneK562H3k4me1StdSig - shortLabel K562 - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 128,128,255 - type bigWig 0 5716 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1Nhek - table wgEncodeBroadHistoneNhekH3k4me1StdSig - shortLabel NHEK - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 212,128,255 - type bigWig 0 2669 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me1Nhlf - table wgEncodeBroadHistoneNhlfH3k4me1StdSig - shortLabel NHLF - longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE - parent wgEncodeRegMarkH3k4me1 - color 255,128,212 - type bigWig 0 6866 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3 - container multiWig - noInherit on - type bigWig 0 10000 - superTrack wgEncodeReg hide - shortLabel Layered H3K4Me3 - longLabel H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE - visibility hide - viewLimits 0:150 - maxHeightPixels 100:30:11 - aggregate transparentOverlay - showSubtrackColorOnUi on - priority 1.3 - dragAndDrop subtracks - allButtonPair on - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - #track wgEncodeRegMarkH3k4me3Gm12878 - track wgEncodeBroadHistoneGm12878H3k4me3StdSig - shortLabel GM12878 - longLabel H3K4Me3 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 255,128,128 - type bigWig 0 5199 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3H1hesc - table wgEncodeBroadHistoneH1hescH3k4me3StdSig - shortLabel H1-hESC - longLabel H3K4Me3 Mark (Often Found Near Promoters) on H1-hESC Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 255,212,128 - type bigWig 0 6957 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3Hsmm - table wgEncodeBroadHistoneHsmmH3k4me3StdSig - shortLabel HSMM - longLabel H3K4Me3 Mark (Often Found Near Promoters) on HSMM Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 120,235,204 - type bigWig 0 25995 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3Huvec - table wgEncodeBroadHistoneHuvecH3k4me3StdSig - shortLabel HUVEC - longLabel H3K4Me3 Mark (Often Found Near Promoters) on HUVEC Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 128,212,255 - type bigWig 0 7852 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3K562 - table wgEncodeBroadHistoneK562H3k4me3StdSig - shortLabel K562 - longLabel H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 128,128,255 - type bigWig 0 9918 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3Nhek - table wgEncodeBroadHistoneNhekH3k4me3StdSig - shortLabel NHEK - longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 212,128,255 - type bigWig 0 8230 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k4me3Nhlf - table wgEncodeBroadHistoneNhlfH3k4me3StdSig - shortLabel NHLF - longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHLF Cells from ENCODE - parent wgEncodeRegMarkH3k4me3 - color 255,128,212 - type bigWig 0 19229 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27ac - container multiWig - noInherit on - type bigWig 0 10000 - superTrack wgEncodeReg full - shortLabel Layered H3K27Ac - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE - visibility full - viewLimits 0:100 - maxHeightPixels 100:30:11 - aggregate transparentOverlay - showSubtrackColorOnUi on - priority 1.4 - dragAndDrop subtracks - allButtonPair on - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acGm12878 - table wgEncodeBroadHistoneGm12878H3k27acStdSig - shortLabel GM12878 - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 255,128,128 - type bigWig 0 223899 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acH1hesc - table wgEncodeBroadHistoneH1hescH3k27acStdSig - shortLabel H1-hESC - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on H1-hESC Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 255,212,128 - type bigWig 0 14898 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acHsmm - table wgEncodeBroadHistoneHsmmH3k27acStdSig - shortLabel HSMM - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on HSMM Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 120,235,204 - type bigWig 0 5448 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acHuvec - table wgEncodeBroadHistoneHuvecH3k27acStdSig - shortLabel HUVEC - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on HUVEC Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 128,212,255 - type bigWig 0 3721 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acK562 - table wgEncodeBroadHistoneK562H3k27acStdSig - shortLabel K562 - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 128,128,255 - type bigWig 0 6249 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acNhek - table wgEncodeBroadHistoneNhekH3k27acStdSig - shortLabel NHEK - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 212,128,255 - type bigWig 0 23439 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - - track wgEncodeRegMarkH3k27acNhlf - table wgEncodeBroadHistoneNhlfH3k27acStdSig - shortLabel NHLF - longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHLF Cells from ENCODE - parent wgEncodeRegMarkH3k27ac - color 255,128,212 - type bigWig 0 3851 - pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19" - origAssembly hg19 - -