df99c448f8e0386bb718da0044b22752fc145713 gperez2 Thu Jun 4 00:15:12 2026 -0700 Updating ENCODE4 Regulation labels and description pages for hg38 and mm10. refs #34923 - Capitalized 363 hg38 Layered organ shortLabels and shortened the over-length TF rPeaks and Indiv. composite longLabels; updated the mm10 TF ChIP container longLabel. - TF rPeaks: added the missing SHOX2 to filterValues.factor (now 912), and updated "911 factors"/"2,502 experiments" to "912"/"2,509". - Supertrack pages: changed Layered bullets from "highlights" to "displays", reworded the histone and CTCF bullets, updated the default-organ note, and updated stale hg38 organ counts to 38/41/26/38/36. - Updated the TF ChIP facet name "Tf" -> "TF" on both description pages. - Makedoc: updated hg38 "911-factor" -> "912-factor" and mm10 RNA-seq Unstranded "26" -> "8". diff --git src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4TfChip.html src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4TfChip.html index b087f4c105b..8dab1a0a973 100644 --- src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4TfChip.html +++ src/hg/makeDb/trackDb/human/hg38/wgEncodeReg4TfChip.html @@ -38,31 +38,31 @@ <tr> <th bgcolor="#E3E3E3"></th> <th align="left">1 (lowest signal)</th> </tr> </table> </li> </ul> <p>Peaks often correspond to protein binding sites in specific biosamples. Additional ChIP-seq datasets can be explored through the <a target="_blank" href="https://www.encodeproject.org/">ENCODE portal</a>.</p> <h2>Display Conventions and Configuration</h2> <p>Click a specific protein target and organ/tissue combination to view available datasets. -Subtracks can be further filtered by Tf, Organ, Biosample Type, Life Stage, and Data +Subtracks can be further filtered by TF, Organ, Biosample Type, Life Stage, and Data Type (Signal or Peak).</p> <p>Signal subtracks are colored by the organ or tissue of origin, as shown below. Peak subtracks use the grayscale shading by ChIP-seq signal described above and are not colored by organ.</p> <table cellspacing="0" cellpadding="4" style="margin-top: 0.5em; border-collapse: collapse;"> <tr> <td style="background-color:rgb(255,119,39); padding:4px 12px; border:1px solid #666;">adipose</td> <td style="background-color:rgb(90,179,68); padding:4px 12px; border:1px solid #666;">adrenal gland</td> <td style="background-color:rgb(254,75,173); padding:4px 12px; border:1px solid #666;">blood</td> <td style="background-color:rgb(255,37,41); padding:4px 12px; border:1px solid #666;">blood vessel</td> </tr> <tr> <td style="background-color:rgb(121,147,150); padding:4px 12px; border:1px solid #666;">bone</td> <td style="background-color:rgb(2,199,185); padding:4px 12px; border:1px solid #666;">bone marrow</td>