c7a78bd7342f93f63acaf6759ca7077b9caaa64c gperez2 Wed Jul 22 22:05:43 2026 -0700 Announcing the ENCODE4 cCREs and ENCODE4 Regulation tracks. Adding pennantIcons on mm10 cCREs/cCREregistry/coreCcres and hg38/mm10 ENCODE4 Regulation supertracks, making ENCODE4 Regulation show by default and adding a deprecation pennantIcon on ENCODE3 Regulation. Renaming ENCODE Regulation to ENCODE3 Regulation on hg38 and removing the separate wgEncodeReg.alpha.ra file. refs #37845 refs #34923 refs #37131 diff --git src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra index c68eefe4211..2b544fa220c 100644 --- src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra +++ src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra @@ -3,31 +3,31 @@ longLabel ENCODE4 Core Collection of 18 biosamples: cCREs and signals parent cCREs compositeTrack on html coreCollection.html priority 1.5 subGroup1 organ Organ_Tissue blood=Blood brain=Brain heart=Heart kidney=Kidney liver=Liver lung=Lung spleen=Spleen stomach=Stomach thymus=Thymus subGroup2 biosampleType Biosample_type tissue=Tissue cell_line=Cell_line subGroup3 view Views cCREs_view=cCREs DNase_view=DNase H3K4me3_view=H3K4me3 H3K27ac_view=H3K27ac CTCF_view=CTCF subGroup4 simpleBiosample Biosample CH12_LX=CH12_LX MEL=MEL cerebellum_male_adult_8_weeks=cerebellum_male_adult_8_weeks forebrain_postnatal_0_days=forebrain_postnatal_0_days heart_male_adult_8_weeks=heart_male_adult_8_weeks heart_postnatal_0_days=heart_postnatal_0_days hindbrain_postnatal_0_days=hindbrain_postnatal_0_days kidney_male_adult_8_weeks=kidney_male_adult_8_weeks kidney_postnatal_0_days=kidney_postnatal_0_days liver_embryo_14_5_days=liver_embryo_14_5_days liver_male_adult_8_weeks=liver_male_adult_8_weeks liver_postnatal_0_days=liver_postnatal_0_days lung_embryo_14_5_days=lung_embryo_14_5_days lung_postnatal_0_days=lung_postnatal_0_days midbrain_postnatal_0_days=midbrain_postnatal_0_days spleen_male_adult_8_weeks=spleen_male_adult_8_weeks stomach_postnatal_0_days=stomach_postnatal_0_days thymus_male_adult_8_weeks=thymus_male_adult_8_weeks subGroup5 dataType Data_type typeCcres=cCREs typeDNase=DNase typeH3k4me3=H3K4me3 typeH3k27ac=H3K27ac typeCtcf=CTCF dimensions dimX=biosampleType dimY=organ sortOrder dataType=+ organ=+ biosampleType=+ shortLabel ENCODE4 Core Collection visibility hide dataVersion ENCODE release 4, 2024. (Includes ENCODE2, ENCODE3, and mouse ENCODE data) -pennantIcon New red +pennantIcon New red ../goldenPath/newsarch.html#072226 "Released Jul. 22, 2026" track cCREs_view view cCREs_view parent coreCcres shortLabel cCREs visibility squish type bigBed filterValues.cCRE_class CA-only|Chromatin accessibility only (CA-only),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhancer|Proximal enhancer,Promoter|Promoter,Low-DNase|Low-DNase filterType.cCRE_class multipleListOr filterLabel.cCRE_class cCRE class track ENCFF325FZS_ENCFF396LHC_ENCFF010WPI_ENCFF196GIY priority 15 type bigBed 9 + 5 longLabel Midbrain, postnatal (0 days): (1) cCREs