df99c448f8e0386bb718da0044b22752fc145713 gperez2 Thu Jun 4 00:15:12 2026 -0700 Updating ENCODE4 Regulation labels and description pages for hg38 and mm10. refs #34923 - Capitalized 363 hg38 Layered organ shortLabels and shortened the over-length TF rPeaks and Indiv. composite longLabels; updated the mm10 TF ChIP container longLabel. - TF rPeaks: added the missing SHOX2 to filterValues.factor (now 912), and updated "911 factors"/"2,502 experiments" to "912"/"2,509". - Supertrack pages: changed Layered bullets from "highlights" to "displays", reworded the histone and CTCF bullets, updated the default-organ note, and updated stale hg38 organ counts to 38/41/26/38/36. - Updated the TF ChIP facet name "Tf" -> "TF" on both description pages. - Makedoc: updated hg38 "911-factor" -> "912-factor" and mm10 RNA-seq Unstranded "26" -> "8". diff --git src/hg/makeDb/trackDb/mouse/mm10/encode4RegTfChip.html src/hg/makeDb/trackDb/mouse/mm10/encode4RegTfChip.html index cfffa21a7cb..7462fbf502a 100644 --- src/hg/makeDb/trackDb/mouse/mm10/encode4RegTfChip.html +++ src/hg/makeDb/trackDb/mouse/mm10/encode4RegTfChip.html @@ -37,31 +37,31 @@ 1 (lowest signal)

Peaks often correspond to protein binding sites in specific biosamples. Additional ChIP-seq datasets can be explored through the ENCODE portal.

Display Conventions and Configuration

Click a specific protein target and organ/tissue combination to view available datasets. -Subtracks can be further filtered by Tf, Organ, Biosample Type, and Data Type (Signal +Subtracks can be further filtered by TF, Organ, Biosample Type, and Data Type (Signal or Peak).

Signal subtracks are colored by the organ or tissue of origin, as shown below. Peak subtracks use the grayscale shading by ChIP-seq signal described above and are not colored by organ.

blood bone marrow brain connective tissue
embryo