26c4835e47a40f162ae82c0ea20e1997f42bc4ad gperez2 Tue Apr 21 16:35:37 2026 -0700 Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414 diff --git src/hg/makeDb/trackDb/mouseDevTimecourseCreditsAndReferences.shared.html src/hg/makeDb/trackDb/mouseDevTimecourseCreditsAndReferences.shared.html new file mode 100644 index 00000000000..23eaa895cc3 --- /dev/null +++ src/hg/makeDb/trackDb/mouseDevTimecourseCreditsAndReferences.shared.html @@ -0,0 +1,34 @@ +<h2>Credits</h2> +<p> +Peng He (<!-- above address is Peng.He at ucsf.edu --><A HREF="mailto:Peng.He@ucsf.edu">Peng.He@ucsf.edu</A>) +was the lead author for this project and performed the data analysis. +Diane Trout (<!-- above address is diane at caltech.edu --><A HREF="mailto:diane@caltech.edu">diane@caltech.edu</A>) +at the Wold Lab, Caltech, was responsible for data management. The data +were produced as part of the ENCODE Consortium.</p> + +<h2>References</h2> +<p> +Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, +Chaisson M, Gingeras TR. +<a href="https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/bts635" +target="_blank"> +STAR: ultrafast universal RNA-seq aligner</a>. +<em>Bioinformatics</em>. 2013 Jan 1;29(1):15-21. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/23104886" +target="_blank">23104886</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530905/" +target="_blank">PMC3530905</a> +</p> + +<p> +Li B, Dewey CN. +<a href="https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-323" +target="_blank"> +RSEM: accurate transcript quantification from RNA-Seq data with or +without a reference genome</a>. +<em>BMC Bioinformatics</em>. 2011 Aug 4;12:323. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/21816040" +target="_blank">21816040</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3163565/" +target="_blank">PMC3163565</a> +</p>