e5116de1d75b89b28693d3df2a3531f7b6c4a6eb gperez2 Fri Jun 5 11:49:58 2026 -0700 Restored the standalone ENCODE Expression superTrack on mm10 per team discussion on #37001. Added ENCODE3 Regulation and ENCODE4 Regulation as related tracks on mm10. Added a Released TBD pennantIcon on the mm10 and mm39 superTracks. refs #37001 diff --git src/hg/makeDb/trackDb/relatedTracks.ra src/hg/makeDb/trackDb/relatedTracks.ra index f0ebaa52f3f..da1696c7c3f 100644 --- src/hg/makeDb/trackDb/relatedTracks.ra +++ src/hg/makeDb/trackDb/relatedTracks.ra @@ -81,30 +81,34 @@ hg19 gnomadPLI constraintSuper Container track of various constraint scores hg19 avada varaico The AVADA track is no longer updated. See VARAICO for the latest variants mined from papers. hg19 varaico avada Previous literature mining track for variants extracted from publications. No longer updated. # mm39: mm39 knownGene knownGeneArchive View previous versions of GENCODE Genes mm39 knownGeneArchive knownGene View the latest GENCODE Genes version # mm10 ENCODE4 Regulation: mm10 encode4Reg encode3Reg Previous ENCODE3 Regulation track mm10 encode3Reg encode4Reg New ENCODE4 Regulation track mm10 encode4Reg cCREs Related ENCODE4 cCRE annotations mm10 cCREs encode4Reg Related ENCODE4 regulation data +mm10 mouseDevTimecourse encode3Reg Related ENCODE3 Regulation tracks +mm10 encode3Reg mouseDevTimecourse Related ENCODE Expression track +mm10 mouseDevTimecourse encode4Reg Related ENCODE4 Regulation tracks +mm10 encode4Reg mouseDevTimecourse Related ENCODE Expression track # hg38 long-read SV supertrack cross-links to other SV resources: hg38 lrSv gnomadStructuralVariants Short-read structural variants from gnomAD v4.1 hg38 gnomadStructuralVariants lrSv Long-read structural variants across multiple cohorts hg38 lrSv dbVarSv NCBI dbVar structural variants (short-read and long-read, germline and clinical) hg38 dbVarSv lrSv Long-read structural variants across multiple cohorts hg38 lrSv dgvPlus Database of Genomic Variants (DGV) structural variation catalog hg38 dgvPlus lrSv Long-read structural variants across multiple cohorts hg38 lrSv giabSv Genome in a Bottle high-confidence SV benchmark callsets hg38 giabSv lrSv Long-read structural variants across multiple cohorts hg38 lrSv mei Polymorphic Mobile Element Insertions (Alu, L1, SVA, HERVK, snRNA) from HGSVC3 long-read assemblies hg38 mei lrSv Long-read structural variants across multiple cohorts (parent SV callsets for the HGSVC3 MEI track) hs1 lrSv mei Polymorphic Mobile Element Insertions (Alu, L1, SVA, HERVK, snRNA) from HGSVC3 long-read assemblies hs1 mei lrSv Long-read structural variants across multiple cohorts (parent SV callsets for the HGSVC3 MEI track)