52ebb985f6e3658f463e971b7acd4c3959d36f92
gperez2
Wed Apr 22 17:38:06 2026 -0700
Enlarged classification diagram (40% to 60%) on the cCRE registry
and Core Collection description pages. Updated the shortLabels on
all 90 Core Collection subtracks with biosample + age + assay
labels. refs #37131
diff --git src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
index bb0398302c7..1b73154fc99 100644
--- src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
@@ -1,1222 +1,1222 @@
track coreCcres
type bigBed 12
longLabel ENCODE4 Core Collection of 18 biosamples: cCREs and signals
parent cCREs
compositeTrack on
html coreCollection.html
priority 1.5
subGroup1 organ Organ_Tissue blood=Blood brain=Brain heart=Heart kidney=Kidney liver=Liver lung=Lung spleen=Spleen stomach=Stomach thymus=Thymus
subGroup2 biosampleType Biosample_type tissue=Tissue cell_line=Cell_line
subGroup3 view Views cCREs_view=cCREs DNase_view=DNase H3K4me3_view=H3K4me3 H3K27ac_view=H3K27ac CTCF_view=CTCF
subGroup4 simpleBiosample Biosample CH12_LX=CH12_LX MEL=MEL cerebellum_male_adult_8_weeks=cerebellum_male_adult_8_weeks forebrain_postnatal_0_days=forebrain_postnatal_0_days heart_male_adult_8_weeks=heart_male_adult_8_weeks heart_postnatal_0_days=heart_postnatal_0_days hindbrain_postnatal_0_days=hindbrain_postnatal_0_days kidney_male_adult_8_weeks=kidney_male_adult_8_weeks kidney_postnatal_0_days=kidney_postnatal_0_days liver_embryo_14_5_days=liver_embryo_14_5_days liver_male_adult_8_weeks=liver_male_adult_8_weeks liver_postnatal_0_days=liver_postnatal_0_days lung_embryo_14_5_days=lung_embryo_14_5_days lung_postnatal_0_days=lung_postnatal_0_days midbrain_postnatal_0_days=midbrain_postnatal_0_days spleen_male_adult_8_weeks=spleen_male_adult_8_weeks stomach_postnatal_0_days=stomach_postnatal_0_days thymus_male_adult_8_weeks=thymus_male_adult_8_weeks
subGroup5 dataType Data_type typeCcres=cCREs typeDNase=DNase typeH3k4me3=H3K4me3 typeH3k27ac=H3K27ac typeCtcf=CTCF
dimensions dimX=biosampleType dimY=organ
sortOrder dataType=+ organ=+ biosampleType=+
shortLabel ENCODE4 Core Collection
visibility hide
dataVersion ENCODE release 4, 2024. (Includes ENCODE2, ENCODE3, and mouse ENCODE data)
track cCREs_view
view cCREs_view
parent coreCcres
shortLabel cCREs
visibility squish
type bigBed
track ENCFF325FZS_ENCFF396LHC_ENCFF010WPI_ENCFF196GIY
priority 15
type bigBed 9 + 5
longLabel Midbrain, postnatal (0 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF325FZS_ENCFF396LHC_ENCFF010WPI_ENCFF196GIY.bb
subGroups organ=brain view=cCREs_view simpleBiosample=midbrain_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF325FZS_ENCFF396LHC_ENCFF010WPI_ENCFF196GIY
+shortLabel Midbr P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF784TNW_ENCFF990HLQ_ENCFF258KWF_ENCFF811CFN
priority 13
type bigBed 9 + 5
longLabel Lung, postnatal (0 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF784TNW_ENCFF990HLQ_ENCFF258KWF_ENCFF811CFN.bb
subGroups organ=lung view=cCREs_view simpleBiosample=lung_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF784TNW_ENCFF990HLQ_ENCFF258KWF_ENCFF811CFN
+shortLabel Lung P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF374LSN_ENCFF887KNZ_ENCFF269FYI_ENCFF644MRR
priority 8
type bigBed 9 + 5
longLabel Kidney, postnatal (0 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF374LSN_ENCFF887KNZ_ENCFF269FYI_ENCFF644MRR.bb
subGroups organ=kidney view=cCREs_view simpleBiosample=kidney_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF374LSN_ENCFF887KNZ_ENCFF269FYI_ENCFF644MRR
+shortLabel Kidney P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF822FDB_ENCFF615BKA_ENCFF683GNP_ENCFF494FQV
priority 6
type bigBed 9 + 5
longLabel Hindbrain, postnatal (0 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF822FDB_ENCFF615BKA_ENCFF683GNP_ENCFF494FQV.bb
subGroups organ=brain view=cCREs_view simpleBiosample=hindbrain_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF822FDB_ENCFF615BKA_ENCFF683GNP_ENCFF494FQV
+shortLabel Hindbr P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF727CYI_ENCFF050AHA_ENCFF422JMO_ENCFF247XHY
priority 3
type bigBed 9 + 5
longLabel Forebrain, postnatal (0 days): (1) cCREs
parent cCREs_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF727CYI_ENCFF050AHA_ENCFF422JMO_ENCFF247XHY.bb
subGroups organ=brain view=cCREs_view simpleBiosample=forebrain_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF727CYI_ENCFF050AHA_ENCFF422JMO_ENCFF247XHY
+shortLabel Forebr P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF947JCM_ENCFF738LHV_ENCFF306XSO_ENCFF055IZM
priority 5
type bigBed 9 + 5
longLabel Heart, postnatal (0 days): (1) cCREs
parent cCREs_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF947JCM_ENCFF738LHV_ENCFF306XSO_ENCFF055IZM.bb
subGroups organ=heart view=cCREs_view simpleBiosample=heart_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF947JCM_ENCFF738LHV_ENCFF306XSO_ENCFF055IZM
+shortLabel Heart P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF907KGU_ENCFF341GEF_ENCFF544RNA_ENCFF935ZIU
priority 11
type bigBed 9 + 5
longLabel Liver, postnatal (0 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF907KGU_ENCFF341GEF_ENCFF544RNA_ENCFF935ZIU.bb
subGroups organ=liver view=cCREs_view simpleBiosample=liver_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF907KGU_ENCFF341GEF_ENCFF544RNA_ENCFF935ZIU
+shortLabel Liver P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF616XIK_ENCFF127UZI_ENCFF865CCV_ENCFF355LDM
priority 12
type bigBed 9 + 5
longLabel Lung, embryo (14.5 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF616XIK_ENCFF127UZI_ENCFF865CCV_ENCFF355LDM.bb
subGroups organ=lung view=cCREs_view simpleBiosample=lung_embryo_14_5_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF616XIK_ENCFF127UZI_ENCFF865CCV_ENCFF355LDM
+shortLabel Lung E14.5 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF738YPD_ENCFF083LRQ_ENCFF500YJD_ENCFF394DGY
priority 17
type bigBed 9 + 5
longLabel Stomach, postnatal (0 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF738YPD_ENCFF083LRQ_ENCFF500YJD_ENCFF394DGY.bb
subGroups organ=stomach view=cCREs_view simpleBiosample=stomach_postnatal_0_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF738YPD_ENCFF083LRQ_ENCFF500YJD_ENCFF394DGY
+shortLabel Stomach P0 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF389BAE_ENCFF244PVS_ENCFF622QOD_ENCFF990MGK
priority 10
type bigBed 9 + 5
longLabel Liver, male adult (8 weeks): (1) cCREs
parent cCREs_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF389BAE_ENCFF244PVS_ENCFF622QOD_ENCFF990MGK.bb
subGroups organ=liver view=cCREs_view simpleBiosample=liver_male_adult_8_weeks biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF389BAE_ENCFF244PVS_ENCFF622QOD_ENCFF990MGK
+shortLabel Liver 8wk cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF744DCK_ENCFF673XLI_ENCFF859YPP_ENCFF196NRY
priority 7
type bigBed 9 + 5
longLabel Kidney, male adult (8 weeks): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF744DCK_ENCFF673XLI_ENCFF859YPP_ENCFF196NRY.bb
subGroups organ=kidney view=cCREs_view simpleBiosample=kidney_male_adult_8_weeks biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF744DCK_ENCFF673XLI_ENCFF859YPP_ENCFF196NRY
+shortLabel Kidney 8wk cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF686CDW_ENCFF200ISF_ENCFF284KSX_ENCFF239UQO
priority 18
type bigBed 9 + 5
longLabel Thymus, male adult (8 weeks): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF686CDW_ENCFF200ISF_ENCFF284KSX_ENCFF239UQO.bb
subGroups organ=thymus view=cCREs_view simpleBiosample=thymus_male_adult_8_weeks biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF686CDW_ENCFF200ISF_ENCFF284KSX_ENCFF239UQO
+shortLabel Thymus 8wk cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF145VWQ_ENCFF430CHA_ENCFF770LBL_ENCFF244ZJY
priority 14
type bigBed 9 + 5
longLabel MEL: (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF145VWQ_ENCFF430CHA_ENCFF770LBL_ENCFF244ZJY.bb
subGroups organ=spleen view=cCREs_view simpleBiosample=MEL biosampleType=cell_line dataType=typeCcres
-shortLabel ENCFF145VWQ_ENCFF430CHA_ENCFF770LBL_ENCFF244ZJY
+shortLabel MEL cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF323LVW_ENCFF186DCG_ENCFF595IQM_ENCFF233QSB
priority 9
type bigBed 9 + 5
longLabel Liver, embryo (14.5 days): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF323LVW_ENCFF186DCG_ENCFF595IQM_ENCFF233QSB.bb
subGroups organ=liver view=cCREs_view simpleBiosample=liver_embryo_14_5_days biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF323LVW_ENCFF186DCG_ENCFF595IQM_ENCFF233QSB
+shortLabel Liver E14.5 cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF228LWM_ENCFF420ORJ_ENCFF666CND_ENCFF499GIZ
priority 2
type bigBed 9 + 5
longLabel CH12.LX: (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF228LWM_ENCFF420ORJ_ENCFF666CND_ENCFF499GIZ.bb
subGroups organ=blood view=cCREs_view simpleBiosample=CH12_LX biosampleType=cell_line dataType=typeCcres
-shortLabel ENCFF228LWM_ENCFF420ORJ_ENCFF666CND_ENCFF499GIZ
+shortLabel CH12.LX cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF862WQC_ENCFF660WNU_ENCFF266FCV_ENCFF809JIR
priority 4
type bigBed 9 + 5
longLabel Heart, male adult (8 weeks): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF862WQC_ENCFF660WNU_ENCFF266FCV_ENCFF809JIR.bb
subGroups organ=heart view=cCREs_view simpleBiosample=heart_male_adult_8_weeks biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF862WQC_ENCFF660WNU_ENCFF266FCV_ENCFF809JIR
+shortLabel Heart 8wk cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF514QGG_ENCFF523GNO_ENCFF920QDX_ENCFF803MIB
priority 16
type bigBed 9 + 5
longLabel Spleen, male adult (8 weeks): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF514QGG_ENCFF523GNO_ENCFF920QDX_ENCFF803MIB.bb
subGroups organ=spleen view=cCREs_view simpleBiosample=spleen_male_adult_8_weeks biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF514QGG_ENCFF523GNO_ENCFF920QDX_ENCFF803MIB
+shortLabel Spleen 8wk cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track ENCFF265EIS_ENCFF288SAJ_ENCFF645OJK_ENCFF087SVX
priority 1
type bigBed 9 + 5
longLabel Cerebellum, male adult (8 weeks): (1) cCREs
parent cCREs_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF265EIS_ENCFF288SAJ_ENCFF645OJK_ENCFF087SVX.bb
subGroups organ=brain view=cCREs_view simpleBiosample=cerebellum_male_adult_8_weeks biosampleType=tissue dataType=typeCcres
-shortLabel ENCFF265EIS_ENCFF288SAJ_ENCFF645OJK_ENCFF087SVX
+shortLabel Cereb 8wk cCREs
visibility squish
mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}
url https://screen.wenglab.org/search?assembly=mm10&accessions=$$
urlLabel cCRE Core Collection details on SCREEN
track DNase_view
view DNase_view
parent coreCcres
shortLabel DNase
visibility full
type bigWig
track ENCFF325FZS
priority 15.1
type bigWig
longLabel Midbrain, postnatal (0 days): (2) DNase, ENCFF325FZS
autoScale on
color 6,218,147
parent DNase_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF325FZS.bw
subGroups organ=brain view=DNase_view simpleBiosample=midbrain_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF325FZS
+shortLabel Midbr P0 DNase
visibility full
track ENCFF784TNW
priority 13.1
type bigWig
longLabel Lung, postnatal (0 days): (2) DNase, ENCFF784TNW
autoScale on
color 6,218,147
parent DNase_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF784TNW.bw
subGroups organ=lung view=DNase_view simpleBiosample=lung_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF784TNW
+shortLabel Lung P0 DNase
visibility full
track ENCFF374LSN
priority 8.1
type bigWig
longLabel Kidney, postnatal (0 days): (2) DNase, ENCFF374LSN
autoScale on
color 6,218,147
parent DNase_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF374LSN.bw
subGroups organ=kidney view=DNase_view simpleBiosample=kidney_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF374LSN
+shortLabel Kidney P0 DNase
visibility full
track ENCFF822FDB
priority 6.1
type bigWig
longLabel Hindbrain, postnatal (0 days): (2) DNase, ENCFF822FDB
autoScale on
color 6,218,147
parent DNase_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF822FDB.bw
subGroups organ=brain view=DNase_view simpleBiosample=hindbrain_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF822FDB
+shortLabel Hindbr P0 DNase
visibility full
track ENCFF727CYI
priority 3.1
type bigWig
longLabel Forebrain, postnatal (0 days): (2) DNase, ENCFF727CYI
autoScale on
color 6,218,147
parent DNase_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF727CYI.bw
subGroups organ=brain view=DNase_view simpleBiosample=forebrain_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF727CYI
+shortLabel Forebr P0 DNase
visibility full
track ENCFF947JCM
priority 5.1
type bigWig
longLabel Heart, postnatal (0 days): (2) DNase, ENCFF947JCM
autoScale on
color 6,218,147
parent DNase_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF947JCM.bw
subGroups organ=heart view=DNase_view simpleBiosample=heart_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF947JCM
+shortLabel Heart P0 DNase
visibility full
track ENCFF907KGU
priority 11.1
type bigWig
longLabel Liver, postnatal (0 days): (2) DNase, ENCFF907KGU
autoScale on
color 6,218,147
parent DNase_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF907KGU.bw
subGroups organ=liver view=DNase_view simpleBiosample=liver_postnatal_0_days biosampleType=tissue dataType=typeDNase
maxHeightPixels 30
-shortLabel ENCFF907KGU
+shortLabel Liver P0 DNase
visibility full
track ENCFF616XIK
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track ENCFF738YPD
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type bigWig
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shortLabel H3K4me3
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+shortLabel Heart 8wk H3K27ac
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track ENCFF920QDX
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type bigWig
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color 255,205,0
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maxHeightPixels 30
-shortLabel ENCFF920QDX
+shortLabel Spleen 8wk H3K27ac
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track ENCFF645OJK
priority 1.3
type bigWig
longLabel Cerebellum, male adult (8 weeks): (4) H3K27ac, ENCFF645OJK
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color 255,205,0
parent H3K27ac_view off
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maxHeightPixels 30
-shortLabel ENCFF645OJK
+shortLabel Cereb 8wk H3K27ac
visibility full
track CTCF_view
view CTCF_view
parent coreCcres
shortLabel CTCF
visibility full
type bigWig
track ENCFF196GIY
priority 15.4
type bigWig
longLabel Midbrain, postnatal (0 days): (5) CTCF, ENCFF196GIY
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF196GIY.bw
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maxHeightPixels 30
-shortLabel ENCFF196GIY
+shortLabel Midbr P0 CTCF
visibility full
track ENCFF811CFN
priority 13.4
type bigWig
longLabel Lung, postnatal (0 days): (5) CTCF, ENCFF811CFN
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF811CFN.bw
subGroups organ=lung view=CTCF_view simpleBiosample=lung_postnatal_0_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF811CFN
+shortLabel Lung P0 CTCF
visibility full
track ENCFF644MRR
priority 8.4
type bigWig
longLabel Kidney, postnatal (0 days): (5) CTCF, ENCFF644MRR
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF644MRR.bw
subGroups organ=kidney view=CTCF_view simpleBiosample=kidney_postnatal_0_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF644MRR
+shortLabel Kidney P0 CTCF
visibility full
track ENCFF494FQV
priority 6.4
type bigWig
longLabel Hindbrain, postnatal (0 days): (5) CTCF, ENCFF494FQV
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF494FQV.bw
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maxHeightPixels 30
-shortLabel ENCFF494FQV
+shortLabel Hindbr P0 CTCF
visibility full
track ENCFF247XHY
priority 3.4
type bigWig
longLabel Forebrain, postnatal (0 days): (5) CTCF, ENCFF247XHY
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color 0,176,240
parent CTCF_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF247XHY.bw
subGroups organ=brain view=CTCF_view simpleBiosample=forebrain_postnatal_0_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF247XHY
+shortLabel Forebr P0 CTCF
visibility full
track ENCFF055IZM
priority 5.4
type bigWig
longLabel Heart, postnatal (0 days): (5) CTCF, ENCFF055IZM
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color 0,176,240
parent CTCF_view on
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subGroups organ=heart view=CTCF_view simpleBiosample=heart_postnatal_0_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF055IZM
+shortLabel Heart P0 CTCF
visibility full
track ENCFF935ZIU
priority 11.4
type bigWig
longLabel Liver, postnatal (0 days): (5) CTCF, ENCFF935ZIU
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF935ZIU.bw
subGroups organ=liver view=CTCF_view simpleBiosample=liver_postnatal_0_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF935ZIU
+shortLabel Liver P0 CTCF
visibility full
track ENCFF355LDM
priority 12.4
type bigWig
longLabel Lung, embryo (14.5 days): (5) CTCF, ENCFF355LDM
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF355LDM.bw
subGroups organ=lung view=CTCF_view simpleBiosample=lung_embryo_14_5_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF355LDM
+shortLabel Lung E14.5 CTCF
visibility full
track ENCFF394DGY
priority 17.4
type bigWig
longLabel Stomach, postnatal (0 days): (5) CTCF, ENCFF394DGY
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF394DGY.bw
subGroups organ=stomach view=CTCF_view simpleBiosample=stomach_postnatal_0_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF394DGY
+shortLabel Stomach P0 CTCF
visibility full
track ENCFF990MGK
priority 10.4
type bigWig
longLabel Liver, male adult (8 weeks): (5) CTCF, ENCFF990MGK
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color 0,176,240
parent CTCF_view on
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF990MGK.bw
subGroups organ=liver view=CTCF_view simpleBiosample=liver_male_adult_8_weeks biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF990MGK
+shortLabel Liver 8wk CTCF
visibility full
track ENCFF196NRY
priority 7.4
type bigWig
longLabel Kidney, male adult (8 weeks): (5) CTCF, ENCFF196NRY
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF196NRY.bw
subGroups organ=kidney view=CTCF_view simpleBiosample=kidney_male_adult_8_weeks biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF196NRY
+shortLabel Kidney 8wk CTCF
visibility full
track ENCFF239UQO
priority 18.4
type bigWig
longLabel Thymus, male adult (8 weeks): (5) CTCF, ENCFF239UQO
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF239UQO.bw
subGroups organ=thymus view=CTCF_view simpleBiosample=thymus_male_adult_8_weeks biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF239UQO
+shortLabel Thymus 8wk CTCF
visibility full
track ENCFF244ZJY
priority 14.4
type bigWig
longLabel MEL: (5) CTCF, ENCFF244ZJY
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF244ZJY.bw
subGroups organ=spleen view=CTCF_view simpleBiosample=MEL biosampleType=cell_line dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF244ZJY
+shortLabel MEL CTCF
visibility full
track ENCFF233QSB
priority 9.4
type bigWig
longLabel Liver, embryo (14.5 days): (5) CTCF, ENCFF233QSB
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF233QSB.bw
subGroups organ=liver view=CTCF_view simpleBiosample=liver_embryo_14_5_days biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF233QSB
+shortLabel Liver E14.5 CTCF
visibility full
track ENCFF499GIZ
priority 2.4
type bigWig
longLabel CH12.LX: (5) CTCF, ENCFF499GIZ
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF499GIZ.bw
subGroups organ=blood view=CTCF_view simpleBiosample=CH12_LX biosampleType=cell_line dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF499GIZ
+shortLabel CH12.LX CTCF
visibility full
track ENCFF809JIR
priority 4.4
type bigWig
longLabel Heart, male adult (8 weeks): (5) CTCF, ENCFF809JIR
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color 0,176,240
parent CTCF_view off
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maxHeightPixels 30
-shortLabel ENCFF809JIR
+shortLabel Heart 8wk CTCF
visibility full
track ENCFF803MIB
priority 16.4
type bigWig
longLabel Spleen, male adult (8 weeks): (5) CTCF, ENCFF803MIB
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color 0,176,240
parent CTCF_view off
bigDataUrl /gbdb/mm10/encode4/ccre/coreCollection/ENCFF803MIB.bw
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maxHeightPixels 30
-shortLabel ENCFF803MIB
+shortLabel Spleen 8wk CTCF
visibility full
track ENCFF087SVX
priority 1.4
type bigWig
longLabel Cerebellum, male adult (8 weeks): (5) CTCF, ENCFF087SVX
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color 0,176,240
parent CTCF_view off
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subGroups organ=brain view=CTCF_view simpleBiosample=cerebellum_male_adult_8_weeks biosampleType=tissue dataType=typeCtcf
maxHeightPixels 30
-shortLabel ENCFF087SVX
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visibility full