Commits for gperez2

v495_base to v496_preview (2026-03-09 to 2026-03-16) v496

710dd5a15d434aa67588901bd85a5ec1dfb26357 Mon Mar 9 18:11:59 2026 -0700

• Forgot to commit the Human Methylation Atlas Signals track description page, and remove the humanMethylationAtlas.ra/humanMethylationAtlas.html files in my last commit for the DNA Methylation track, refs #36826
  • src/hg/makeDb/trackDb/human/humanMethylationAtlas.ra - lines changed 49, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/methylationAtlasSignals.html - lines changed 32, context: html, text, full: html, text

88094bfcf5dbf48fbc8147f8b457b334e3025d9b Tue Mar 10 16:43:41 2026 -0700

• Updating the DNA Methylation superTrack track description and adding the yLineOnOff setting for the Human Methylation Atlas Signals track, refs #36826
  • src/hg/makeDb/trackDb/human/dnaMethylation.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/methylationAtlasSignals.ra - lines changed 1, context: html, text, full: html, text

aafd1b5058f9f8a5c044d58d6ca90cb2ffa1304f Thu Mar 12 08:32:42 2026 -0700

• Updating the area index and the text for the position link for the multiRegion test case, No RM
  • src/utils/qa/qaTestScript.py - lines changed 2, context: html, text, full: html, text

c2cf7d570d6980c8cf4a44be1bdf7a68fb06d9c6 Thu Mar 12 22:12:52 2026 -0700

• Updating the longLabel and pennantIcon for the DNA Methylation superTrack, refs #36826
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text

f279f92f74cafe040582a1bc8fe935e947f636a9 Fri Mar 13 18:23:40 2026 -0700

• Announcing the Human Methylation Atlas Summary and Signals tracks for hg38 and hg19, refs #36826
  • src/hg/htdocs/goldenPath/newsarch.html - lines changed 45, context: html, text, full: html, text
  • src/hg/htdocs/images/newsArchImages/humanMethylationAtlas.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/indexNews.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

64f5e1fb8b93253cf89a6f36fb00d67d2ededf1d Sun Mar 15 20:52:02 2026 -0700

• Updating the QuickLift documentation page and the Alignment Differences page, refs #35536
  • src/hg/htdocs/goldenPath/help/hgConvert.html - lines changed 147, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/quickLiftChain.html - lines changed 57, context: html, text, full: html, text
  • src/hg/htdocs/images/QuickLift/quickLiftAlignmentDifferences.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

c15405c93929fa4aa7929d3dcf4aa555ae6652c7 Sun Mar 15 20:58:02 2026 -0700

• Adding images for the QuickLift documentation page, #35536
  • src/hg/htdocs/images/QuickLift/quickLiftGreenbuttons.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/htdocs/images/QuickLift/quickLiftTracks.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)