3649a56fe72fd579be33eae0c33e93c2be0b727b hiram Sat Mar 1 13:35:05 2025 -0800 a couple per user request and VGP update refs #29545 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index de180eb1b9e..bdd8f9e2898 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -1821,30 +1821,31 @@ ./runBuild GCA_039720425.1_bAmaOch1.hap2 birds Amazona_ochrocephala ./runBuild GCA_039720435.1_bAmaOch1.hap1 birds Amazona_ochrocephala ./runBuild GCA_039877575.1_fChaTrf1.hap2 fish Chaetodon_trifascialis ./runBuild GCA_039877785.1_fChaTrf1.hap1 fish Chaetodon_trifascialis ./runBuild GCA_039878515.1_bCotChi1.hap1 birds Excalfactoria_chinensis ./runBuild GCA_039878825.1_bCotChi1.hap2 birds Excalfactoria_chinensis ./runBuild GCA_039880925.1_mMolNig1.hap2 mammals Molossus_nigricans ./runBuild GCA_039880945.1_mMolNig1.hap1 mammals Molossus_nigricans ./runBuild GCA_039881165.1_ASM3988116v1 mammals Bos_indicus ./runBuild GCA_039906465.1_bAegAlb1.hap2 birds Aegotheles_albertisi ./runBuild GCA_039906515.1_mPseCra1.hap1 mammals Pseudorca_crassidens ./runBuild GCA_039906525.1_mPseCra1.hap2 mammals Pseudorca_crassidens ./runBuild GCA_039906565.1_bAegAlb1.hap1 birds Aegotheles_albertisi ./runBuild GCA_040206675.1_aAscTru1.hap2 vertebrate Ascaphus_truei ./runBuild GCA_040206685.1_aAscTru1.hap1 vertebrate Ascaphus_truei +./runBuild GCA_040436485.1_ASM4043648v1 invertebrate Corcyra_cephalonica ./runBuild GCA_040807015.1_bStrCam1.hap2 birds Struthio_camelus ./runBuild GCA_040894005.1_aEngPut4.maternal vertebrate Engystomops_pustulosus ./runBuild GCA_040894015.1_aEngPut4.paternal vertebrate Engystomops_pustulosus ./runBuild GCA_040894355.1_rMyuGeo1.pri.20230808 vertebrate Myuchelys_georgesi ./runBuild GCA_040894355.2_rMyuGeo1.pri vertebrate Myuchelys_georgesi ./runBuild GCA_040937895.1_aHypRig1.alt vertebrate Hyperolius_riggenbachi ./runBuild GCA_040939525.1_ASM4093952v1 vertebrate Protopterus_annectens ./runBuild GCA_040954595.1_ASM4095459v1 invertebrate Saccoglossus_sp._HW-2024a ./runBuild GCA_040954625.1_ASM4095462v1 invertebrate Saccoglossus_sp._HW-2024a ./runBuild GCA_040954845.1_fLepOcu1.hap1 vertebrate Lepisosteus_oculatus ./runBuild GCA_040955645.1_LycPic1.final.hap1 mammals Lycaon_pictus ./runBuild GCA_040955705.1_LycPic1.final.hap2 mammals Lycaon_pictus ./runBuild GCA_041222355.1_F344_StmMcwi mammals Rattus_norvegicus ./runBuild GCA_041834305.1_ASM4183430v1 mammals Megaptera_novaeangliae ./runBuild GCA_042242105.1_fPemKlu1.hap1 fish Pempheris_klunzingeri @@ -2359,30 +2360,31 @@ ./runBuild GCA_964106205.1_mNeoVis2.hap2.1 mammals Neogale_vison ./runBuild GCA_964106545.1_mNeoVis2.hap1.1 mammals Neogale_vison ./runBuild GCA_964106635.2_rPodPit1.hap2.2 vertebrate Podarcis_pityusensis ./runBuild GCA_964106645.2_rPodPit1.hap1.2 vertebrate Podarcis_pityusensis ./runBuild GCA_964106785.1_rPodGai1.hap2.1 vertebrate Podarcis_gaigeae ./runBuild GCA_964106825.2_mVulVul1.hap1.2 mammals Vulpes_vulpes ./runBuild GCA_964106855.1_bGruGru1.hap1.1 birds Grus_grus ./runBuild GCA_964106895.1_bNumArq3.hap1.1 birds Numenius_arquata ./runBuild GCA_964106915.1_rPodGai1.hap1.1 vertebrate Podarcis_gaigeae ./runBuild GCA_964106915.2_rPodGai1.hap1.2 vertebrate Podarcis_gaigeae ./runBuild GCA_964106925.2_mVulVul1.hap2.2 mammals Vulpes_vulpes ./runBuild GCA_964145185.1_mMinSch1.hap2.1 mammals Miniopterus_schreibersii ./runBuild GCA_964146895.1_mMinSch1.hap1.1 mammals Miniopterus_schreibersii ./runBuild GCA_964148845.1_mMesBid2.hap2.1 mammals Mesoplodon_bidens ./runBuild GCA_964165515.1_mMesBid2.hap1.1 mammals Mesoplodon_bidens +./runBuild GCA_964166675.1_xgCepNemo3.hap2.1 invertebrate Cepaea_nemoralis ./runBuild GCA_964187855.1_kmMyxGlut1.1 vertebrate Myxine_glutinosa ./runBuild GCA_964188175.1_rPodSic1.hap1.1 vertebrate Podarcis_siculus ./runBuild GCA_964188305.1_rPodBoc1.hap1.1 vertebrate Podarcis_bocagei ./runBuild GCA_964188315.1_rPodMur119.hap1.1 vertebrate Podarcis_muralis ./runBuild GCA_964188325.1_rPodBoc1.hap2.1 vertebrate Podarcis_bocagei ./runBuild GCA_964188335.1_bAnaPla2.hap2.1 birds Anas_platyrhynchos ./runBuild GCA_964188345.1_bAnaPla2.hap1.1 birds Anas_platyrhynchos ./runBuild GCA_964188355.1_bButBut1.hap1.1 birds Buteo_buteo ./runBuild GCA_964188365.1_rPodMur119.hap2.1 vertebrate Podarcis_muralis ./runBuild GCA_964188375.1_bButBut1.hap2.1 birds Buteo_buteo ./runBuild GCA_964188395.1_rPodSic1.hap2.1 vertebrate Podarcis_siculus ./runBuild GCA_964188405.1_fProPar1.1 fish Protomyctophum_parallelum ./runBuild GCA_964188415.1_fProPar1.1_alternate_haplotype fish Protomyctophum_parallelum ./runBuild GCA_964188535.1_C57BL_6J_T2T_v1 mammals Mus_musculus ./runBuild GCA_964188545.1_CAST_EiJ_T2T_v1 mammals Mus_musculus_castaneus @@ -5089,30 +5091,31 @@ ./runBuild GCF_041296235.1_EquAss-T2T_v2 mammals Equus_asinus ./runBuild GCF_041296265.1_TB-T2T mammals Equus_caballus ./runBuild GCF_041296385.1_UR_Acoe_1.0 birds Aphelocoma_coerulescens ./runBuild GCF_041381155.1_Ai_NY invertebrate Argopecten_irradians ./runBuild GCF_041956435.1_Mycthe1 fungi Mycothermus_thermophilus ./runBuild GCF_041956525.1_Rhipu1 fungi Rhizomucor_pusillus ./runBuild GCF_041956535.1_Calth1 fungi Calcarisporiella_thermophila ./runBuild GCF_041956625.1_Talth1 fungi Thermomyces_dupontii ./runBuild GCF_041956635.1_Thela1 fungi Thermomyces_lanuginosus ./runBuild GCF_041956645.1_Rasby1 fungi Rasamsonia_byssochlamydoides ./runBuild GCF_041956765.1_Thecr1 fungi Thermoascus_crustaceus ./runBuild GCF_042100115.1_ASM4210011v1 fungi Alternaria_dauci ./runBuild GCF_042242105.1_fPemKlu1.hap1 fish Pempheris_klunzingeri ./runBuild GCF_042370625.1_Mychet1 fungi Thermothelomyces_heterothallicus_CBS_202.75 ./runBuild GCF_042477335.1_ARS-UI_OviCan_v1 mammals Ovis_canadensis +./runBuild GCF_043159975.1_mMacNem.hap1 primates Macaca_nemestrina ./runBuild GCF_043380555.1_NfurGRZ-RIMD1 fish Nothobranchius_furzeri ./runBuild GCF_043641665.1_fEnoArm2.hap1 fish Enoplosus_armatus ./runBuild GCF_044704955.1_sPriJap1.hap1 vertebrate Pristiophorus_japonicus ./runBuild GCF_900000015.1_Plasmopara_halstedii_genome invertebrate Plasmopara_halstedii ./runBuild GCF_900002335.3_GCA_900002335 invertebrate Plasmodium_chabaudi_chabaudi ./runBuild GCF_900002375.2_GCA_900002375 invertebrate Plasmodium_berghei_ANKA ./runBuild GCF_900002385.2_GCA_900002385 invertebrate Plasmodium_yoelii ./runBuild GCF_900005765.1_PRELSG invertebrate Plasmodium_relictum ./runBuild GCF_900005855.1_PGAL8A invertebrate Plasmodium_gallinaceum ./runBuild GCF_900007245.1_AQF_AC_PRJEB9495_v1 fungi Priceomyces_carsonii ./runBuild GCF_900007375.1_ASM90000737v1 fungi Fusarium_venenatum ./runBuild GCF_900044065.1_Genome_assembly_version_1 fungi Fusarium_mangiferae ./runBuild GCF_900067095.1_F._proliferatum_ET1_version_1 fungi Fusarium_proliferatum_ET1 ./runBuild GCF_900067755.1_pvi1.1 vertebrate Pogona_vitticeps ./runBuild GCF_900074925.1_version_1 fungi Ramularia_collo-cygni