6116bdab443a8dc802081eeb6451dcd889ffa4b5 hiram Sun Apr 13 22:08:28 2025 -0700 VGP update refs #29545 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index 7a2c802257b..2d8cf4f935a 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -1569,30 +1569,31 @@ ./runBuild GCA_028017835.1_rEmyOrb1.hap1 vertebrate Emys_orbicularis ./runBuild GCA_028017845.1_rEmyOrb1.hap2 vertebrate Emys_orbicularis ./runBuild GCA_028018385.1_mNeoNeb1.pri mammals Neofelis_nebulosa ./runBuild GCA_028018655.1_mNeoNeb1.alt mammals Neofelis_nebulosa ./runBuild GCA_028018845.1_bMelGeo1.pri birds Melospiza_georgiana ./runBuild GCA_028019105.1_bMelGeo1.alt birds Melospiza_georgiana ./runBuild GCA_028020675.1_bPodStr1.alt birds Podargus_strigoides ./runBuild GCA_028020825.1_bPodStr1.pri birds Podargus_strigoides ./runBuild GCA_028021215.1_mEscRob2.pri mammals Eschrichtius_robustus ./runBuild GCA_028021475.1_mEscRob2.alt mammals Eschrichtius_robustus ./runBuild GCA_028021495.1_fLycPai1.hap1 fish Lycodopsis_pacificus ./runBuild GCA_028022725.1_fLycPai1.hap2 fish Lycodopsis_pacificus ./runBuild GCA_028022735.1_bGypBar2.pri birds Gypaetus_barbatus ./runBuild GCA_028023285.1_mBalRic1.hap2 mammals Balaenoptera_ricei ./runBuild GCA_028372415.1_mMacEug1.pri mammals Notamacropus_eugenii +./runBuild GCA_028372415.2_mMacEug1.pri_v2 mammals Notamacropus_eugenii ./runBuild GCA_028389875.1_bPtePen1.pri birds Rhea_pennata ./runBuild GCA_028389885.1_bPtePen1.alt birds Rhea_pennata ./runBuild GCA_028389975.1_mMacEug1.alt mammals Notamacropus_eugenii ./runBuild GCA_028390025.1_aPseCor3.hap2 vertebrate Pseudophryne_corroboree ./runBuild GCA_028390055.1_aPseCor3.hap1 vertebrate Pseudophryne_corroboree ./runBuild GCA_028451465.1_mEreDor1.pri mammals Erethizon_dorsatum ./runBuild GCA_028500815.1_bRisTri1.patW.cur.20221130 birds Rissa_tridactyla ./runBuild GCA_028500835.1_mEreDor1.alt mammals Erethizon_dorsatum ./runBuild GCA_028501385.1_bRisTri1.mat.cur.20221130 birds Rissa_tridactyla ./runBuild GCA_028533085.1_Varecia_variegata_HiC primates Varecia_variegata ./runBuild GCA_028533165.1_Leontopithecus_rosalia_HiC primates Leontopithecus_rosalia ./runBuild GCA_028534055.1_Eulemur_mongoz_HiC primates Eulemur_mongoz ./runBuild GCA_028534865.1_ddPopTric1.0.hap2 plants Populus_trichocarpa ./runBuild GCA_028534895.1_ddPopTric1.0.hap1 plants Populus_trichocarpa ./runBuild GCA_028534965.1_dmUmbCali1.0.hap1 plants Umbellularia_californica @@ -2006,30 +2007,33 @@ ./runBuild GCA_048593245.1_ASM4859324v1 mammals Dasyurus_maculatus ./runBuild GCA_048593285.1_ASM4859328v1 mammals Dasyurus_maculatus ./runBuild GCA_048593295.1_ASM4859329v1 mammals Sminthopsis_crassicaudata ./runBuild GCA_048593325.1_ASM4859332v1 mammals Sarcophilus_harrisii ./runBuild GCA_048593335.1_ASM4859333v1 mammals Notamacropus_eugenii ./runBuild GCA_048593345.1_ASM4859334v1 mammals Notamacropus_eugenii ./runBuild GCA_048628825.1_ASM4862882v1 fish Menidia_menidia ./runBuild GCA_048771865.1_mCteGun2.hap2 mammals Ctenodactylus_gundi ./runBuild GCA_048771875.1_mCteGun2.hap1 mammals Ctenodactylus_gundi ./runBuild GCA_048771995.1_bTaeGut7.mat birds Taeniopygia_guttata ./runBuild GCA_048772025.1_bTaeGut7.pat birds Taeniopygia_guttata ./runBuild GCA_048772815.1_mCalLat2.hap1 mammals Callospermophilus_lateralis ./runBuild GCA_048772825.1_mCalLat2.hap2 mammals Callospermophilus_lateralis ./runBuild GCA_049082045.1_fCriAus1.1_haplotype_2 fish Cristiceps_australis ./runBuild GCA_049082185.1_fCriAus1.1_haplotype_1 fish Cristiceps_australis +./runBuild GCA_049190655.1_fLepSal2.hap2 fish Lepidogalaxias_salamandroides +./runBuild GCA_049190665.1_fLepSal2.hap1 fish Lepidogalaxias_salamandroides +./runBuild GCA_049354655.1_calJac240_alt primates Callithrix_jacchus ./runBuild GCA_900002395.1_PYYM01 invertebrate Plasmodium_yoelii ./runBuild GCA_900006655.3_Susie3 primates Gorilla_gorilla_gorilla ./runBuild GCA_900011295.1_ATCC19606_assembly bacteria Acinetobacter_baumannii ./runBuild GCA_900029915.1_F._proliferatum_NRRL62905_version_1 fungi Fusarium_proliferatum ./runBuild GCA_900036025.1_v1.0 invertebrate Lymnaea_stagnalis ./runBuild GCA_900044135.1_GZPH1RResV1 fungi Fusarium_graminearum ./runBuild GCA_900088365.1_Bl71nemr invertebrate Branchiostoma_lanceolatum ./runBuild GCA_900090025.2_PowCR01 invertebrate Plasmodium_ovale ./runBuild GCA_900090035.2_PocGH01 invertebrate Plasmodium_ovale ./runBuild GCA_900093555.2_GCA_900093555 invertebrate Plasmodium_vivax ./runBuild GCA_900094045.1_LASV_isolate_Alzey viral Mammarenavirus_lassaense ./runBuild GCA_900094665.2_CAROLI_EIJ_v1.1 mammals Mus_caroli ./runBuild GCA_900095595.1_PPRFG01 invertebrate Plasmodium_sp._gorilla_clade_G1 ./runBuild GCA_900097025.1_PRG01 invertebrate Plasmodium_reichenowi ./runBuild GCA_900097035.1_PBLACG01 invertebrate Plasmodium_sp._gorilla_clade_G3 @@ -2469,31 +2473,33 @@ ./runBuild GCA_964059295.1_bNumArq3.hap2.1 birds Numenius_arquata ./runBuild GCA_964059595.1_bBucCla1.1 birds Bucephala_clangula ./runBuild GCA_964094495.2_mMyoMys1.hap1.1 mammals Myotis_mystacinus ./runBuild GCA_964106205.1_mNeoVis2.hap2.1 mammals Neogale_vison ./runBuild GCA_964106545.1_mNeoVis2.hap1.1 mammals Neogale_vison ./runBuild GCA_964106635.2_rPodPit1.hap2.2 vertebrate Podarcis_pityusensis ./runBuild GCA_964106645.2_rPodPit1.hap1.2 vertebrate Podarcis_pityusensis ./runBuild GCA_964106785.1_rPodGai1.hap2.1 vertebrate Podarcis_gaigeae ./runBuild GCA_964106825.2_mVulVul1.hap1.2 mammals Vulpes_vulpes ./runBuild GCA_964106855.1_bGruGru1.hap1.1 birds Grus_grus ./runBuild GCA_964106895.1_bNumArq3.hap1.1 birds Numenius_arquata ./runBuild GCA_964106915.1_rPodGai1.hap1.1 vertebrate Podarcis_gaigeae ./runBuild GCA_964106915.2_rPodGai1.hap1.2 vertebrate Podarcis_gaigeae ./runBuild GCA_964106925.2_mVulVul1.hap2.2 mammals Vulpes_vulpes ./runBuild GCA_964145185.1_mMinSch1.hap2.1 mammals Miniopterus_schreibersii +./runBuild GCA_964145185.2_mMinSch1.hap2.2 mammals Miniopterus_schreibersii ./runBuild GCA_964146895.1_mMinSch1.hap1.1 mammals Miniopterus_schreibersii +./runBuild GCA_964146895.2_mMinSch1.hap1.2 mammals Miniopterus_schreibersii ./runBuild GCA_964148845.1_mMesBid2.hap2.1 mammals Mesoplodon_bidens ./runBuild GCA_964165515.1_mMesBid2.hap1.1 mammals Mesoplodon_bidens ./runBuild GCA_964166675.1_xgCepNemo3.hap2.1 invertebrate Cepaea_nemoralis ./runBuild GCA_964187855.1_kmMyxGlut1.1 vertebrate Myxine_glutinosa ./runBuild GCA_964187965.1_klBraLanc2.hap1.1 invertebrate Branchiostoma_lanceolatum ./runBuild GCA_964188175.1_rPodSic1.hap1.1 vertebrate Podarcis_siculus ./runBuild GCA_964188305.1_rPodBoc1.hap1.1 vertebrate Podarcis_bocagei ./runBuild GCA_964188315.1_rPodMur119.hap1.1 vertebrate Podarcis_muralis ./runBuild GCA_964188325.1_rPodBoc1.hap2.1 vertebrate Podarcis_bocagei ./runBuild GCA_964188335.1_bAnaPla2.hap2.1 birds Anas_platyrhynchos ./runBuild GCA_964188345.1_bAnaPla2.hap1.1 birds Anas_platyrhynchos ./runBuild GCA_964188355.1_bButBut1.hap1.1 birds Buteo_buteo ./runBuild GCA_964188365.1_rPodMur119.hap2.1 vertebrate Podarcis_muralis ./runBuild GCA_964188375.1_bButBut1.hap2.1 birds Buteo_buteo ./runBuild GCA_964188395.1_rPodSic1.hap2.1 vertebrate Podarcis_siculus @@ -2536,31 +2542,33 @@ ./runBuild GCA_964212145.1_pySymPilo4.1_alternate_haplotype invertebrate Symbiodinium_pilosum ./runBuild GCA_964213995.1_sMusAst1.hap1.1 vertebrate Mustelus_asterias ./runBuild GCA_964214025.1_sMusAst1.hap2.1 vertebrate Mustelus_asterias ./runBuild GCA_964234715.1_rPodMel1.hap1.1 vertebrate Podarcis_melisellensis ./runBuild GCA_964234825.1_rPodMel1.hap2.1 vertebrate Podarcis_melisellensis ./runBuild GCA_964237395.1_bGalChl1.hap2.1 birds Gallinula_chloropus ./runBuild GCA_964237555.1_mOryCun1.1 mammals Oryctolagus_cuniculus ./runBuild GCA_964237585.1_bGalChl1.hap1.1 birds Gallinula_chloropus ./runBuild GCA_964251985.1_rPodErh1.hap2.1 vertebrate Podarcis_erhardii ./runBuild GCA_964252035.1_rPodErh1.hap1.1 vertebrate Podarcis_erhardii ./runBuild GCA_964261635.1_aLisHel1.1 vertebrate Lissotriton_helveticus ./runBuild GCA_964263255.1_aLisVul1.1 vertebrate Lissotriton_vulgaris ./runBuild GCA_964263835.1_fCorLav1.hap2.1 fish Coregonus_lavaretus ./runBuild GCA_964263955.1_fCorLav1.hap1.1 fish Coregonus_lavaretus ./runBuild GCA_964264875.1_mNycLei1.hap1.1 mammals Nyctalus_leisleri +./runBuild GCA_964264875.2_mNycLei1.hap1.2 mammals Nyctalus_leisleri ./runBuild GCA_964264895.1_mNycLei1.hap2.1 mammals Nyctalus_leisleri +./runBuild GCA_964264895.2_mNycLei1.hap2.2 mammals Nyctalus_leisleri ./runBuild GCA_964266715.1_fMicKit1.1 fish Microstomus_kitt ./runBuild GCA_964270355.1_Elg.assembly.v.1.0 mammals Alces_alces ./runBuild GCA_964270875.1_rPodFil1.hap2.1 vertebrate Podarcis_filfolensis ./runBuild GCA_964270895.1_rPodFil1.hap1.1 vertebrate Podarcis_filfolensis ./runBuild GCA_964270905.1_mLagAcu1.hap1.1 mammals Lagenorhynchus_acutus ./runBuild GCA_964270935.1_mLagAcu1.hap2.1 mammals Lagenorhynchus_acutus ./runBuild GCA_964271855.1_mAcoMin1 mammals Acomys_minous ./runBuild GCA_964273445.1_bStrDea1.hap1.1 birds Streptopelia_decaocto ./runBuild GCA_964273585.1_bStrDea1.hap2.1 birds Streptopelia_decaocto ./runBuild GCA_964273705.1_rNatHel1.hap1.1 vertebrate Natrix_helvetica ./runBuild GCA_964273795.1_rNatHel1.hap2.1 vertebrate Natrix_helvetica ./runBuild GCA_964276385.1_fGasAcu3.hap2.1 fish Gasterosteus_aculeatus ./runBuild GCA_964276395.1_fGasAcu3.hap1.1 fish Gasterosteus_aculeatus ./runBuild GCA_964289735.1_bPhaAeh10.maternal.1 birds Phaethon_aethereus ./runBuild GCA_964289755.1_bPhaAeh10.paternal.1 birds Phaethon_aethereus @@ -2572,46 +2580,48 @@ ./runBuild GCA_964374335.1_fAstCal68.1 fish Astatotilapia_calliptera ./runBuild GCA_964417125.1_bLarArg3.hap2.1 birds Larus_argentatus ./runBuild GCA_964417175.1_bLarArg3.hap1.1 birds Larus_argentatus ./runBuild GCA_964638095.1_fPorCra3.hap1.1 fish Poromitra_crassiceps ./runBuild GCA_964638665.1_fPorCra3.hap2.1 fish Poromitra_crassiceps ./runBuild GCA_964656075.1_mPipNat1.hap2.1 mammals Pipistrellus_nathusii ./runBuild GCA_964656225.1_mPipNat1.hap1.1 mammals Pipistrellus_nathusii ./runBuild GCA_964656455.1_mHalGry1.hap1.1 mammals Halichoerus_grypus ./runBuild GCA_964656465.1_mHalGry1.hap2.1 mammals Halichoerus_grypus ./runBuild GCA_964662095.1_mMusNiv2.hap2.1 mammals Mustela_nivalis ./runBuild GCA_964662115.1_mMusNiv2.hap1.1 mammals Mustela_nivalis ./runBuild GCA_965112155.1_rPodLio1.hap1.1 vertebrate Podarcis_liolepis ./runBuild GCA_965113295.1_fLeuLeu2.hap1.1 fish Leuciscus_leuciscus ./runBuild GCA_965113305.1_rPodVau1.hap2.1 vertebrate Podarcis_vaucheri ./runBuild GCA_965113315.1_rPodVau1.hap1.1 vertebrate Podarcis_vaucheri +./runBuild GCA_965113325.1_fLeuLeu2.hap2.1 fish Leuciscus_leuciscus ./runBuild GCA_965115925.1_mMyoEma1.hap1.1 mammals Myotis_emarginatus ./runBuild GCA_965115945.1_mMyoEma1.hap2.1 mammals Myotis_emarginatus ./runBuild GCA_965119305.1_aPelLes1.hap1.1 vertebrate Pelophylax_lessonae ./runBuild GCA_965119315.1_aPelLes1.hap2.1 vertebrate Pelophylax_lessonae ./runBuild GCA_965140185.1_bAthNoc1.hap2.1 birds Athene_noctua ./runBuild GCA_965140235.1_rCarCar1.hap1 vertebrate Caretta_caretta ./runBuild GCA_965140245.1_bAthNoc1.hap1.1 birds Athene_noctua ./runBuild GCA_965140255.1_rLepOli2.hap2 vertebrate Lepidochelys_olivacea ./runBuild GCA_965140265.1_rLepKem1.hap2 vertebrate Lepidochelys_kempii ./runBuild GCA_965140275.1_rCarCar1.hap2 vertebrate Caretta_caretta ./runBuild GCA_965140285.1_rLepKem1.hap1 vertebrate Lepidochelys_kempii ./runBuild GCA_965140295.1_rLepOli2.hap1 vertebrate Lepidochelys_olivacea ./runBuild GCA_965140915.1_bAytMar2.hap1.1 birds Aythya_marila ./runBuild GCA_965140925.1_bAytMar2.hap2.1 birds Aythya_marila ./runBuild GCA_965151615.1_bCygCol1.1 birds Cygnus_columbianus ./runBuild GCA_965152195.1_rNatDep2.hap2 vertebrate Natator_depressus +./runBuild GCA_965152235.1_rEreImb1.hap1 vertebrate Eretmochelys_imbricata ./runBuild GCA_965152275.1_rNatDep2.hap1 vertebrate Natator_depressus ./runBuild GCA_965152285.1_rEreImb1.hap2 vertebrate Eretmochelys_imbricata ./runBuild GCA_965153285.1_rPodTil1.hap1.1 vertebrate Podarcis_tiliguerta ./runBuild GCA_965153305.1_rPodTil1.hap2.1 vertebrate Podarcis_tiliguerta ./runBuild GCA_965178375.1_rPodLio1.hap2.1 vertebrate Podarcis_liolepis ./runBuild GCA_965178535.1_bColMon1.hap2.1 birds Coloeus_monedula ./runBuild GCA_965178545.1_bColMon1.hap1.1 birds Coloeus_monedula ./runBuild GCA_965183785.1_bPlaLeu2.hap2.1 birds Platalea_leucorodia ./runBuild GCA_965183815.1_bPlaLeu2.hap1.1 birds Platalea_leucorodia ./runBuild GCA_965194725.1_mBalBor1.hap2.1 mammals Balaenoptera_borealis ./runBuild GCA_965194765.1_mBalPhy2.hap2.1 mammals Balaenoptera_physalus ./runBuild GCA_965194805.1_mBalBor1.hap1.1 mammals Balaenoptera_borealis ./runBuild GCA_965194825.1_mBalPhy2.hap1.1 mammals Balaenoptera_physalus ./runBuild GCA_965202575.1_ktThaDemo2.hap2.1 invertebrate Thalia_democratica ./runBuild GCA_965202585.1_ktThaDemo2.hap1.1 invertebrate Thalia_democratica