acdf4cc28a8651e554426c493d06380e2bacf895 hiram Wed Jun 11 17:04:29 2025 -0700 adding updated HPRC assemblies and a user request refs #35415 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index 87950ecee19..d27482d0a37 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -1,17 +1,18 @@ ./runBuild GCA_000001905.1_Loxafr3.0 mammals Loxodonta_africana ./runBuild GCA_000001985.1_JCVI-PMFA1-2.0 fungi Talaromyces_marneffei_ATCC_18224 +./runBuild GCA_000002195.1_Amel_4.5 invertebrate Apis_mellifera ./runBuild GCA_000002305.1_EquCab2.0 mammals Equus_caballus ./runBuild GCA_000002525.1_ASM252v1 fungi Yarrowia_lipolytica_CLIB122 ./runBuild GCA_000002545.2_ASM254v2 fungi Nakaseomyces_glabratus ./runBuild GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5 plants Chlamydomonas_reinhardtii ./runBuild GCA_000002725.2_ASM272v2 invertebrate Leishmania_major_strain_Friedlin ./runBuild GCA_000002765.3_GCA_000002765 invertebrate Plasmodium_falciparum_3D7 ./runBuild GCA_000002825.3_ASM282v3 invertebrate Trichomonas_vaginalis_G3 ./runBuild GCA_000002875.2_ASM287v2 invertebrate Leishmania_infantum_JPCM5 ./runBuild GCA_000002945.3_ASM294v3 fungi Schizosaccharomyces_pombe ./runBuild GCA_000003205.6_Btau_5.0.1 mammals Bos_taurus ./runBuild GCA_000003225.1_ASM322v1 invertebrate Theileria_annulata ./runBuild GCA_000003525.2_BD_ER3_V1 fungi Blastomyces_dermatitidis_ER-3 ./runBuild GCA_000003625.1_OryCun2.0 mammals Oryctolagus_cuniculus ./runBuild GCA_000003835.1_ASM383v1 fungi Clavispora_lusitaniae_ATCC_42720 ./runBuild GCA_000003855.2_BD_SLH14081_V1 fungi Blastomyces_gilchristii_SLH14081 @@ -1315,30 +1316,31 @@ ./runBuild GCA_018506155.1_HG03098.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018506165.1_HG03098.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018506945.1_HG005.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018506955.1_HG00733.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018506955.2_HG00733_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018506965.1_HG005.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018506965.2_HG005_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018506975.1_HG00733.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018691715.1_ASM1869171v1 invertebrate Phytophthora_cinnamomi ./runBuild GCA_018852585.1_HG02145.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018852585.2_HG02145_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018852595.1_HG02145.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018852605.1_HG002.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018852605.2_ASM1885260v2 primates Homo_sapiens ./runBuild GCA_018852605.3_Q100_hg002v1.0.1.pat primates Homo_sapiens +./runBuild GCA_018852605.3_hg002v1.1.pat primates Homo_sapiens ./runBuild GCA_018852615.1_HG002.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018852615.2_Q100_hg002v1.0.1.mat primates Homo_sapiens ./runBuild GCA_018852615.3_Q100_hg002v1.0.1.mat primates Homo_sapiens ./runBuild GCA_018852615.3_hg002v1.1.mat primates Homo_sapiens ./runBuild GCA_018873775.2_hg01243.v3.0 primates Homo_sapiens ./runBuild GCA_018983045.1_YUN_Tarv_1.0 plants Thlaspi_arvense ./runBuild GCA_019022885.1_Schi1.0 invertebrate Schlechtendalia_chinensis ./runBuild GCA_019023105.1_LSU_DiBr_2.0 birds Diglossa_brunneiventris ./runBuild GCA_019049465.1_Diul.assembly.v1.1 invertebrate Dryas_iulia_moderata ./runBuild GCA_019049475.1_ASM1904947v1 invertebrate Eueides_isabella ./runBuild GCA_019059535.1_ASM1905953v1 invertebrate Entamoeba_histolytica_KU48 ./runBuild GCA_019059595.1_ASM1905959v1 invertebrate Cnaphalocrocis_exigua ./runBuild GCA_019096175.1_IZB_EATRO1125_Draft_genome_1.0 invertebrate Trypanosoma_brucei ./runBuild GCA_019096205.1_PxLV.1 invertebrate Plutella_xylostella ./runBuild GCA_019207075.1_Bb-hap invertebrate Branchiostoma_floridae_x_Branchiostoma_belcheri @@ -2012,50 +2014,118 @@ ./runBuild GCA_041900015.1_HG02056_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900085.1_HG02056_pat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900105.1_HG02015_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900115.1_HG03834_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900135.1_HG02258_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900165.1_HG02015_pat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900235.1_HG01261_pat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900245.1_HG00408_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900255.1_HG00408_pat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900265.1_HG00597_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900275.1_HG01192_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900365.1_HG00597_pat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041900385.1_HG02129_mat_hprc_rel2 primates Homo_sapiens ./runBuild GCA_041902795.1_ASM4190279v1 fish Electrophorus_electricus ./runBuild GCA_041903045.1_ASM4190304v1 fish Epinephelus_lanceolatus +./runBuild GCA_042026455.1_HG02293_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042026465.1_HG02280_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042026475.1_HG02451_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042026525.1_HG01099_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042026535.1_HG03704_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027065.1_HG01981_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027095.1_HG00609_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027105.1_HG02004_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027135.1_HG02451_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027145.1_HG01496_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027445.1_HG03704_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027455.1_HG02004_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027475.1_HG01099_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027485.1_HG02280_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027495.1_HG02293_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027505.1_HG01981_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027545.1_HG00609_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027595.1_HG01496_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027635.1_HG02300_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027645.1_HG01433_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027655.1_HG01993_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027665.1_HG01884_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042027765.1_HG04184_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028025.1_HG03831_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028065.1_HG02647_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028145.1_HG03927_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028155.1_HG00642_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028165.1_HG01346_mat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028275.1_HG01884_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028475.1_HG02300_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028635.1_HG04184_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028645.1_HG01433_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042028705.1_HG01993_pat_hprc_f2 primates Homo_sapiens +./runBuild GCA_042077885.1_HG00128_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_042077965.1_HG00290_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_042077985.1_HG00232_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_042077995.1_HG00146_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_042078005.1_HG00133_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_042078025.1_HG00128_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_042078085.1_HG00146_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_042242105.1_fPemKlu1.hap1 fish Pempheris_klunzingeri ./runBuild GCA_042242115.1_fArrGeo1.hap1 fish Arripis_georgiana ./runBuild GCA_042242125.1_fPemKlu1.hap2 fish Pempheris_klunzingeri ./runBuild GCA_042242135.1_fArrGeo1.hap2 fish Arripis_georgiana ./runBuild GCA_043159975.1_mMacNem.hap1 primates Macaca_nemestrina ./runBuild GCA_043161795.1_mMacNem.hap2 primates Macaca_nemestrina ./runBuild GCA_043250625.1_fSebFas1.pri fish Sebastes_fasciatus ./runBuild GCA_043290065.1_mRhyPet1.hap2 mammals Rhynchocyon_petersi ./runBuild GCA_043290085.1_mRhyPet1.hap1 mammals Rhynchocyon_petersi +./runBuild GCA_043304515.1_NA20805_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_043304525.1_HG02155_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_043304535.1_HG03139_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_043304645.1_HG03139_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_043304655.1_HG02155_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_043304965.1_HG03470_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_043304975.1_NA20805_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_043305115.1_HG03470_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_043640875.1_fEnoArm2.hap2 fish Enoplosus_armatus ./runBuild GCA_043727835.1_ASM4372783v1 mammals Aselliscus_stoliczkanus ./runBuild GCA_043727955.1_ASM4372795v1 mammals Hipposideros_larvatus ./runBuild GCA_043728065.1_ASM4372806v1 mammals Rhinolophus_affinis ./runBuild GCA_043728145.1_ASM4372814v1 mammals Rhinolophus_trifoliatus ./runBuild GCA_043748575.1_ASM4374857v1 mammals Rhinolophus_perniger_lanosus ./runBuild GCA_043748645.1_ASM4374864v1 mammals Mops_condylurus ./runBuild GCA_043880285.1_ASM4388028v1 mammals Doryrhina_cyclops ./runBuild GCA_043880425.1_ASM4388042v1 mammals Rhinolophus_yonghoiseni ./runBuild GCA_043880545.1_ASM4388054v1 mammals Rhinopoma_microphyllum ./runBuild GCA_043880595.1_ASM4388059v1 mammals Megaderma_spasma +./runBuild GCA_044164665.1_NA19682_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044164695.1_NA19909_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044164705.1_NA19835_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044164725.1_NA21144_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044164745.1_HG00097_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165025.1_NA21144_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165085.1_NA19776_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165125.1_NA19682_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165205.1_NA19776_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165215.1_HG00097_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165335.1_NA19835_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165395.1_NA19909_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165565.1_NA20850_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165595.1_HG03784_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165645.1_HG00235_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165725.1_NA18565_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165735.1_HG00235_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044165925.1_HG03369_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_044166065.1_NA20282_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_044166095.1_HG03784_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166135.1_NA20346_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166285.1_HG03521_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166395.1_NA18565_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166435.1_NA20809_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166465.1_HG00329_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166515.1_HG00272_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166535.1_NA20850_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166545.1_NA20346_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166575.1_HG00329_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166585.1_NA20282_hap1_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166615.1_NA20809_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166625.1_HG03369_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166635.1_NA21102_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166665.1_HG00272_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_044166765.1_HG00344_hap1_hprc_f2 primates Homo_sapiens @@ -6093,30 +6163,31 @@ ./runBuild GCF_044704955.1_sPriJap1.hap1 vertebrate Pristiophorus_japonicus ./runBuild GCF_045282275.1_CBM3 fungi Nakaseomyces_bracarensis ./runBuild GCF_045679555.1_SLU_Salpinus.1 fish Salvelinus_alpinus ./runBuild GCF_045791955.1_UVic_Ocla_1.0 fish Oncorhynchus_clarkii_lewisi ./runBuild GCF_045865205.1_ASM4586520v1 bacteria Candidatus_Rickettsia_kedanie ./runBuild GCF_045866475.1_ASM4586647v1 fungi Madurella_fahalii ./runBuild GCF_046532895.1_ASM4653289v1 bacteria Rickettsia_koreansis ./runBuild GCF_046629955.1_CSIRO-AGI_Caff_v1 fish Centroberyx_affinis ./runBuild GCF_046630095.1_CSIRO_AGI_Tana_v1 fish Trachinotus_anak ./runBuild GCF_047324105.1_ASM4732410v1 bacteria Brucella_ceti ./runBuild GCF_047495875.1_PitAlb_v1 birds Pithys_albifrons_albifrons ./runBuild GCF_047496725.1_ASM4749672v1 invertebrate Anoplolepis_gracilipes ./runBuild GCF_047496795.1_sChiPun1.3 vertebrate Chiloscyllium_punctatum ./runBuild GCF_047496885.1_sScyTor2.1 vertebrate Scyliorhinus_torazame ./runBuild GCF_047511675.1_mMarFla1.hap1 mammals Marmota_flaviventris +./runBuild GCF_047663525.1_IASCAAS_PekinDuck_T2T birds Anas_platyrhynchos ./runBuild GCF_048164855.1_mCanLup2.hap1 mammals Canis_lupus_baileyi ./runBuild GCF_048418805.1_VulVul3 mammals Vulpes_vulpes ./runBuild GCF_048594095.1_PKINGS_0.4 fish Paramormyrops_kingsleyae ./runBuild GCF_049278075.1_ASM4927807v1 bacteria Rickettsia_endosymbiont_of_Halotydeus_destructor ./runBuild GCF_049306965.1_GRCz12tu fish Danio_rerio ./runBuild GCF_900000015.1_Plasmopara_halstedii_genome invertebrate Plasmopara_halstedii ./runBuild GCF_900002335.3_GCA_900002335 invertebrate Plasmodium_chabaudi_chabaudi ./runBuild GCF_900002375.2_GCA_900002375 invertebrate Plasmodium_berghei_ANKA ./runBuild GCF_900002385.2_GCA_900002385 invertebrate Plasmodium_yoelii ./runBuild GCF_900005765.1_PRELSG invertebrate Plasmodium_relictum ./runBuild GCF_900005855.1_PGAL8A invertebrate Plasmodium_gallinaceum ./runBuild GCF_900007245.1_AQF_AC_PRJEB9495_v1 fungi Priceomyces_carsonii ./runBuild GCF_900007375.1_ASM90000737v1 fungi Fusarium_venenatum ./runBuild GCF_900044065.1_Genome_assembly_version_1 fungi Fusarium_mangiferae ./runBuild GCF_900067095.1_F._proliferatum_ET1_version_1 fungi Fusarium_proliferatum_ET1