e9f4a4f731d395f02c435614640e58b0bf919e23 hiram Tue Apr 8 14:29:52 2025 -0700 BRC update and a couple user requests refs #29545 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index 62206e0342f..75ebf705d08 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -310,30 +310,31 @@ ./runBuild GCA_000826445.1_Acanthamoeba_quina invertebrate Acanthamoeba_quina ./runBuild GCA_000826465.1_Acanthamoeba_mauritaniensis invertebrate Acanthamoeba_mauritaniensis ./runBuild GCA_000826485.1_Acanthamoeba_castellanii invertebrate Acanthamoeba_castellanii ./runBuild GCA_000826505.1_Acanthamoeba_pearcei invertebrate Acanthamoeba_pearcei ./runBuild GCA_000828355.1_SarSca1.0 invertebrate Sarcoptes_scabiei ./runBuild GCA_000831365.1_hl_SW_version_1.0.fasta plants Humulus_lupulus_var._lupulus ./runBuild GCA_000831705.1_ASM83170v1 invertebrate Cryptosporidium_sp._chipmunk_LX-2015 ./runBuild GCA_000835745.1_Cryp_gatt_EJB2_V1 fungi Cryptococcus_gattii_EJB2 ./runBuild GCA_000835755.2_ASM83575v2 fungi Cryptococcus_tetragattii_IND107 ./runBuild GCA_000837645.1_ViralProj14024 viral Betapolyomavirus_macacae ./runBuild GCA_000844025.1_ViralProj14465 viral Equid_alphaherpesvirus_1 ./runBuild GCA_000845665.1_ViralProj14458 viral Murid_gammaherpesvirus_4 ./runBuild GCA_000845685.2_ViralProj14462 viral Human_betaherpesvirus_6A ./runBuild GCA_000847005.2_ViralProj14566 viral Gallid_alphaherpesvirus_1 ./runBuild GCA_000855695.1_Cryp_gatt_CA1873_V1 fungi Cryptococcus_bacillisporus_CA1873 +./runBuild GCA_000857325.3_ViralProj15199 viral Marburg_virus_-_Musoke_Kenya_1980 ./runBuild GCA_000875885.1_ASM87588v1 invertebrate Sarcocystis_neurona ./runBuild GCA_000934455.1_Ppar_1.0 invertebrate Apostichopus_parvimensis ./runBuild GCA_000935105.1_Cryp_gatt_NT-10_V1 fungi Cryptococcus_gattii_NT-10 ./runBuild GCA_000949345.1_ASM94934v1 plants Catharanthus_roseus ./runBuild GCA_000952055.2_Anan_2.0 primates Aotus_nancymaae ./runBuild GCA_000956105.1_Pcoq_1.0 primates Propithecus_coquereli ./runBuild GCA_000961545.1_S_schenckii_v1 fungi Sporothrix_schenckii_1099-18 ./runBuild GCA_000966635.1_Fus_gra_233423_v1 fungi Fusarium_graminearum ./runBuild GCA_000968595.1_ASM96859v1 fungi Rasamsonia_emersonii_CBS_393.64 ./runBuild GCA_000973045.2_ASM97304v2 invertebrate Ixodes_ricinus ./runBuild GCA_000974305.1_ASM97430v1 bacteria Clostridium_tyrobutyricum_DSM_2637__ATCC_25755__JCM_11008 ./runBuild GCA_000978405.1_CapAeg_1.0 mammals Capra_aegagrus ./runBuild GCA_000978805.1_ASM97880v1 mammals Balaenoptera_bonaerensis ./runBuild GCA_001008285.1_ASM100828v1 fungi Emmonsia_crescens_UAMH_3008 ./runBuild GCA_001010745.2_Gbue_2.0 invertebrate Gerris_buenoi @@ -1709,30 +1710,33 @@ ./runBuild GCA_030867165.1_bOpiHoa1.hap2 birds Opisthocomus_hoazin ./runBuild GCA_030914275.2_ASM3091427v2 birds Gallus_gallus ./runBuild GCA_030936125.1_bGavSte3.hap1 birds Gavia_stellata ./runBuild GCA_030936135.1_bGavSte3.hap2 birds Gavia_stellata ./runBuild GCA_031001685.1_rEryReg1.hap3 vertebrate Erythrolamprus_reginae ./runBuild GCA_031001765.1_BBF_mMolAlv_v1 mammals Molossus_alvarezi ./runBuild GCA_031010295.1_CA611_1.0 mammals Canis_lupus_familiaris ./runBuild GCA_031010635.1_OD_1.0 mammals Canis_lupus_familiaris ./runBuild GCA_031010765.1_BD_1.0 mammals Canis_lupus_familiaris ./runBuild GCA_031021085.1_rEryReg1.hap2 vertebrate Erythrolamprus_reginae ./runBuild GCA_031021105.1_rEryReg1.hap1 vertebrate Erythrolamprus_reginae ./runBuild GCA_031109255.1_ASM3110925v1 viral Enterovirus_A71 ./runBuild GCA_031116425.1_ASM3111642v1 viral Enterovirus_5865_sin_000009 ./runBuild GCA_031116435.1_ASM3111643v1 viral Enterovirus_5666_sin_002209 ./runBuild GCA_031116565.1_ASM3111656v1 viral Alkhumra_hemorrhagic_fever_virus +./runBuild GCA_031121245.1_ASM3112124v1 viral Lake_Victoria_marburgvirus_-_Angola2005 +./runBuild GCA_031121255.1_ASM3112125v1 viral Lake_Victoria_marburgvirus_-_DRC1999 +./runBuild GCA_031121995.1_ASM3112199v1 viral Lake_Victoria_marburgvirus_-_Ci67 ./runBuild GCA_031128755.1_ASM3112875v1 viral Human_enterovirus_71_HZ08_Hangzhou_2008 ./runBuild GCA_031129775.1_ASM3112977v1 viral Lake_Victoria_marburgvirus_-_Leiden ./runBuild GCA_031165255.1_Yella_v2 mammals Canis_lupus_familiaris ./runBuild GCA_031190585.1_ASM3119058v1 viral Carnivore_chapparvovirus_1 ./runBuild GCA_031213475.1_uoNerLuet1.0 invertebrate Saccharina_latissima ./runBuild GCA_031319335.1_ASM3131933v1 viral Langya_virus ./runBuild GCA_031322265.1_ASM3132226v1 viral Capira_virus ./runBuild GCA_031468805.1_bMorBas2.hap1 birds Morus_bassanus ./runBuild GCA_031468815.1_bMorBas2.hap2 birds Morus_bassanus ./runBuild GCA_031580275.1_ASM3158027v1 viral Dandenong_virus ./runBuild GCA_031763025.1_ASM3176302v1 invertebrate Macrocystis_pyrifera ./runBuild GCA_031835075.1_ASM3183507v1 primates Saguinus_oedipus ./runBuild GCA_031876335.1_mHipLar1.pri mammals Hipposideros_larvatus ./runBuild GCA_031877785.1_bStrAlu1.hap2 birds Strix_aluco ./runBuild GCA_031877795.1_bStrAlu1.hap1 birds Strix_aluco @@ -2280,30 +2284,31 @@ ./runBuild GCA_921999005.2_CAST_EiJ_v3 mammals Mus_musculus_castaneus ./runBuild GCA_921999095.2_JF1_MsJ_v3 mammals Mus_musculus_molossinus ./runBuild GCA_921999865.2_C57BL_6NJ_v3 mammals Mus_musculus ./runBuild GCA_922000895.2_AKR_J_v3 mammals Mus_musculus ./runBuild GCA_922984935.2_mMelMel3.2_paternal_haplotype mammals Meles_meles ./runBuild GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated mammals Meles_meles ./runBuild GCA_929443795.2_bAccGen1.2 birds Accipiter_gentilis ./runBuild GCA_929447715.1_bAccGen1.1_alternate_haplotype birds Accipiter_gentilis ./runBuild GCA_933228915.1_fTelBon1.1 fish Telmatherina_bonti ./runBuild GCA_933228925.1_fTelBon1.1_alternate_haplotype fish Telmatherina_bonti ./runBuild GCA_936440315.1_fBarBab1.1 fish Barbus_barbus ./runBuild GCA_936446605.1_fBarBab1.1_alternate_haplotype fish Barbus_barbus ./runBuild GCA_937001455.1_mOrcOrc1.1_alternate_haplotype mammals Orcinus_orca ./runBuild GCA_944039255.1_fDanRer4.1_alternate_haplotype fish Danio_rerio ./runBuild GCA_944039275.1_fDanRer4.1 fish Danio_rerio +./runBuild GCA_946000675.1_VITVix101-14Mgt_v1.0 plants Vitis_riparia_x_Vitis_rupestris ./runBuild GCA_946807865.1_fSilAri3.1_alternate_haplotype fish Silurus_aristotelis ./runBuild GCA_946808225.1_fSilAri3.1 fish Silurus_aristotelis ./runBuild GCA_947034865.1_fBarBar1.1 fish Barbatula_barbatula ./runBuild GCA_947034905.1_fBarBar1.1_alternate_haplotype fish Barbatula_barbatula ./runBuild GCA_947179515.1_mApoSyl1.1 mammals Apodemus_sylvaticus ./runBuild GCA_947179525.1_mApoSyl1.1_alternate_haplotype mammals Apodemus_sylvaticus ./runBuild GCA_947247025.1_rVipUrs1.1_alternate_haplotype vertebrate Vipera_ursinii ./runBuild GCA_947247035.1_rVipUrs1.1 vertebrate Vipera_ursinii ./runBuild GCA_947347685.1_fPlePla1.1 fish Pleuronectes_platessa ./runBuild GCA_947347695.1_fPlePla1.1_alternate_haplotype fish Pleuronectes_platessa ./runBuild GCA_947461875.1_bHalAlb1.1 birds Haliaeetus_albicilla ./runBuild GCA_947461935.1_bHalAlb1.1_alternate_haplotype birds Haliaeetus_albicilla ./runBuild GCA_947561715.1_kaAscMent1.1 invertebrate Ascidia_mentula ./runBuild GCA_947593165.1_NZO_HlLtJ_v3 mammals Mus_musculus ./runBuild GCA_947599735.1_LP_J_v3 mammals Mus_musculus @@ -2692,30 +2697,31 @@ ./runBuild GCF_000008325.1_ASM832v1 bacteria Methylococcus_capsulatus_str._Bath ./runBuild GCF_000008865.2_ASM886v2 bacteria Escherichia_coli_O157_H7_str._Sakai ./runBuild GCF_000009045.1_ASM904v1 bacteria Bacillus_subtilis_subsp._subtilis_str._168 ./runBuild GCF_000009085.1_ASM908v1 bacteria Campylobacter_jejuni_subsp._jejuni_NCTC_11168__ATCC_700819 ./runBuild GCF_000009205.2_ASM920v2 bacteria Clostridioides_difficile_630 ./runBuild GCF_000009225.2_ASM922v1 bacteria Pseudomonas_fluorescens_SBW25 ./runBuild GCF_000009765.2_ASM976v2 bacteria Streptomyces_avermitilis_MA-4680__NBRC_14893 ./runBuild GCF_000010085.1_ASM1008v1 bacteria Sodalis_glossinidius_str._morsitans ./runBuild GCF_000011425.1_ASM1142v1 fungi Aspergillus_nidulans_FGSC_A4 ./runBuild GCF_000011945.1_ASM1194v1 bacteria Anaplasma_marginale_str._St._Maries ./runBuild GCF_000012525.1_ASM1252v1 bacteria Synechococcus_elongatus_PCC_7942__FACHB-805 ./runBuild GCF_000013145.1_ASM1314v1 bacteria Ehrlichia_chaffeensis ./runBuild GCF_000015425.1_ASM1542v1 bacteria Acinetobacter_baumannii_ATCC_17978 ./runBuild GCF_000018145.1_ASM1814v1 bacteria Dinoroseobacter_shibae_DFL_12__DSM_16493 ./runBuild GCF_000018525.1_ASM1852v1 bacteria Brucella_canis_ATCC_23365 +./runBuild GCF_000018905.1_ASM1890v1 bacteria Brucella_suis_ATCC_23445 ./runBuild GCF_000020025.1_ASM2002v1 bacteria Nostoc_punctiforme_PCC_73102 ./runBuild GCF_000020305.1_ASM2030v1 bacteria Anaplasma_marginale_str._Florida ./runBuild GCF_000021325.1_ASM2132v1 bacteria Gluconacetobacter_diazotrophicus_PA1_5 ./runBuild GCF_000021865.1_ASM2186v1 bacteria Rhodobacter_capsulatus_SB_1003 ./runBuild GCF_000024505.1_ASM2450v1 bacteria Anaplasma_centrale_str._Israel ./runBuild GCF_000026365.1_ASM2636v1 fungi Zygosaccharomyces_rouxii ./runBuild GCF_000026945.1_ASM2694v1 fungi Candida_dubliniensis_CD36 ./runBuild GCF_000027005.1_ASM2700v1 fungi Komagataella_phaffii_GS115 ./runBuild GCF_000068585.1_ASM6858v1 bacteria Chlamydia_trachomatis ./runBuild GCF_000090745.1_AnoCar2.0 vertebrate Anolis_carolinensis ./runBuild GCF_000090745.2_AnoCar2.0 vertebrate Anolis_carolinensis ./runBuild GCF_000090795.1_v1.0 invertebrate Amphimedon_queenslandica ./runBuild GCF_000090795.2_v1.1 invertebrate Amphimedon_queenslandica ./runBuild GCF_000090985.2_ASM9098v2 plants Micromonas_commoda ./runBuild GCF_000091025.4_ASM9102v4 fungi Eremothecium_gossypii_ATCC_10895 @@ -3288,57 +3294,60 @@ ./runBuild GCF_000845245.1_ViralProj14559 viral Human_betaherpesvirus_5 ./runBuild GCF_000845685.2_ViralProj14462 viral Human_betaherpesvirus_6A ./runBuild GCF_000845705.1_ViralProj14466 viral Yaba_monkey_tumor_virus ./runBuild GCF_000845985.1_ViralProj14535 viral Human_mastadenovirus_D ./runBuild GCF_000846285.1_ViralProj14406 viral Human_papillomavirus_type_92 ./runBuild GCF_000846365.1_ViralProj14422 viral Human_betaherpesvirus_6B ./runBuild GCF_000846685.1_ViralProj14487 viral Human_mastadenovirus_F ./runBuild GCF_000846805.1_ViralProj14517 viral Human_mastadenovirus_A ./runBuild GCF_000846905.1_ViralProj14544 viral Singapore_grouper_iridovirus ./runBuild GCF_000846965.1_ViralProj14558 viral Cercopithecine_alphaherpesvirus_2 ./runBuild GCF_000847045.1_ViralProj14564 viral Paramecium_bursaria_Chlorella_virus_1 ./runBuild GCF_000847185.1_ViralProj14595 viral Yaba-like_disease_virus ./runBuild GCF_000847345.1_ViralMultiSegProj14631 viral Rift_Valley_fever_virus ./runBuild GCF_000847505.1_ViralProj14663 viral Human_T-lymphotropic_virus_2 ./runBuild GCF_000847585.1_ViralProj14679 viral Barmah_Forest_virus +./runBuild GCF_000847705.1_ViralProj14704 viral Vesicular_exanthema_of_swine_virus ./runBuild GCF_000848125.1_ViralProj14625 viral Human_betaherpesvirus_7 ./runBuild GCF_000848485.1_ViralProj14699 viral Simian_foamy_virus ./runBuild GCF_000848505.1_ViralProj14703 viral Zaire_ebolavirus ./runBuild GCF_000848705.1_ViralProj14743 viral Human_respirovirus_1 ./runBuild GCF_000849925.1_ViralMultiSegProj14649 viral Bunyamwera_virus ./runBuild GCF_000849945.1_ViralProj14653 viral Cowden_I_virus ./runBuild GCF_000850045.1_ViralProj14673 viral Vesicular_stomatitis_Indiana_virus ./runBuild GCF_000850205.1_ViralProj14706 viral Human_respirovirus_3 ./runBuild GCF_000850325.1_ViralProj14730 viral Lyssavirus_australis ./runBuild GCF_000850885.1_ViralProj14831 viral Western_equine_encephalitis_virus ./runBuild GCF_000850965.1_ViralMultiSegProj14847 viral La_Crosse_virus ./runBuild GCF_000850985.1_ViralMultiSegProj14851 viral Dugbe_orthonairovirus ./runBuild GCF_000851025.1_ViralMultiSegProj14862 viral Lymphocytic_choriomeningitis_mammarenavirus ./runBuild GCF_000851085.1_ViralProj14875 viral Canine_vesivirus ./runBuild GCF_000851145.1_ViralMultiSegProj14892 viral Influenza_A_virus_A_Hong_Kong_1073_99H9N2 ./runBuild GCF_000851625.1_ViralProj14845 viral Nebraska_virus ./runBuild GCF_000851705.1_ViralMultiSegProj14864 viral Lassa_mammarenavirus ./runBuild GCF_000851865.1_ViralMultiSegProj14902 viral Uukuniemi_virus ./runBuild GCF_000852525.1_ViralProj14874 viral Walrus_calicivirus ./runBuild GCF_000852685.1_ViralProj14911 viral Hendra_henipavirus ./runBuild GCF_000853345.1_ViralProj14877 viral Feline_calicivirus ./runBuild GCF_000853505.1_ViralProj14913 viral Human_coronavirus_229E ./runBuild GCF_000853725.1_ViralMultiSegProj14931 viral Machupo_mammarenavirus +./runBuild GCF_000853765.1_ViralMultiSegProj14939 viral Mammarenavirus_guanaritoense ./runBuild GCF_000853785.1_ViralMultiSegProj14943 viral Oropouche_virus ./runBuild GCF_000853825.1_ViralProj14952 viral Sapovirus_Mc10 ./runBuild GCF_000853865.1_ViralProj14960 viral Human_coronavirus_NL63 ./runBuild GCF_000854045.1_ViralProj14998 viral Chikungunya_virus +./runBuild GCF_000854085.1_ViralProj15006 viral Reston_ebolavirus ./runBuild GCF_000854165.1_ViralMultiSegProj15026 viral Crimean-Congo_hemorrhagic_fever_orthonairovirus ./runBuild GCF_000854265.1_ViralProj15048 viral Sapovirus_Hu_Dresden_pJG-Sap01_DE ./runBuild GCF_000854285.1_ViralMultiSegProj15053 viral Sandfly_fever_Naples_virus ./runBuild GCF_000854405.1_ViralMultiSegProj14930 viral Puumala_orthohantavirus ./runBuild GCF_000854765.1_ViralMultiSegProj15005 viral Orthohantavirus_sinnombreense ./runBuild GCF_000854805.1_ViralProj15014 viral Parainfluenza_virus_5 ./runBuild GCF_000854845.1_ViralProj15025 viral Measles_morbillivirus ./runBuild GCF_000855225.1_ViralMultiSegProj14936 viral Orthohantavirus_tulaense ./runBuild GCF_000855505.1_ViralProj14995 viral Omsk_hemorrhagic_fever_virus ./runBuild GCF_000855545.1_ViralProj15003 viral Human_orthopneumovirus ./runBuild GCF_000855585.1_ViralProj15012 viral Sudan_ebolavirus ./runBuild GCF_000855645.1_ViralMultiSegProj15027 viral Seoul_orthohantavirus ./runBuild GCF_000855745.1_ViralMultiSegProj15036 viral Mopeia_Lassa_virus_reassortant_29 ./runBuild GCF_000855765.1_ViralProj15040 viral Sapovirus_C12 ./runBuild GCF_000855785.1_ViralMultiSegProj15044 viral Hantavirus_Z10 @@ -3518,30 +3527,31 @@ ./runBuild GCF_000918035.2_ViralProj243497 viral Human_associated_cyclovirus_10 ./runBuild GCF_000918095.1_ViralProj243630 viral Human_papillomavirus_178 ./runBuild GCF_000918175.1_ViralProj246130 viral Rosavirus_A2 ./runBuild GCF_000919195.1_ViralProj245453 viral Atlantic_salmon_calicivirus ./runBuild GCF_000920655.1_ViralProj244478 viral Human_cosavirus ./runBuild GCF_000920715.1_ViralProj247501 viral Goose_calicivirus ./runBuild GCF_000922255.1_ViralMultiSegProj255997 viral Heartland_virus ./runBuild GCF_000923215.1_ViralProj255104 viral Human_astrovirus_BF34 ./runBuild GCF_000924015.1_ViralProj257742 viral Human_circovirus_VS6600022 ./runBuild GCF_000925155.1_ViralProj267775 viral San_Miguel_sea_lion_virus_8 ./runBuild GCF_000928555.1_ViralMultiSegProj274585 viral Influenza_A_virus_A_Shanghai_02_2013H7N9 ./runBuild GCF_000929235.1_ViralProj273530 viral Human_smacovirus_1 ./runBuild GCF_000931315.1_ViralProj274158 viral Human_associated_porprismacovirus_2 ./runBuild GCF_000935625.1_ASM93562v1 vertebrate Nanorana_parkeri ./runBuild GCF_000938715.1_LALA0 fungi Lachancea_lanzarotensis +./runBuild GCF_000943645.1_ViralProj276005 viral Orthomarburgvirus_marburgense ./runBuild GCF_000949405.1_V.emery_V1.0 invertebrate Vollenhovia_emeryi ./runBuild GCF_000951035.1_Cang.pa_1.0 primates Colobus_angolensis_palliatus ./runBuild GCF_000951045.1_Mleu.le_1.0 primates Mandrillus_leucophaeus ./runBuild GCF_000951615.1_common_carp_genome fish Cyprinus_carpio ./runBuild GCF_000952055.2_Anan_2.0 primates Aotus_nancymaae ./runBuild GCF_000955945.1_Caty_1.0 primates Cercocebus_atys ./runBuild GCF_000956065.1_Mnem_1.0 primates Macaca_nemestrina ./runBuild GCF_000956105.1_Pcoq_1.0 primates Propithecus_coquereli ./runBuild GCF_000956235.1_wasmannia.A_1.0 invertebrate Wasmannia_auropunctata ./runBuild GCF_000956335.1_Plas_frag_nilgiri_V1 invertebrate Plasmodium_fragile ./runBuild GCF_000961545.1_S_schenckii_v1 fungi Sporothrix_schenckii_1099-18 ./runBuild GCF_000963815.1_ASM96381v1 bacteria Acinetobacter_baumannii ./runBuild GCF_000968595.1_ASM96859v1 fungi Rasamsonia_emersonii_CBS_393.64 ./runBuild GCF_000971095.1_AnsCyg_PRJNA183603_v1.0 birds Anser_cygnoides_domesticus ./runBuild GCF_000972845.2_L_crocea_2.0 fish Larimichthys_crocea