a36006a7ddfa0c559bdc43f9437eb476b53e0d52 hiram Thu Apr 10 13:33:50 2025 -0700 VGP update refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index e2cf931d71c..afd8e6bc36b 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -180,30 +180,31 @@ GCA_009829125.1_fPerMag1.pri fish GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates GCA_010909765.1_sAmbRad1.pri vertebrate GCA_010993605.1_kPetMar1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100535.1_mCalJac1.pat primates GCA_011100555.2_mCalJa1.2.pat.X primates GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_013339725.1_BIME_Rmic_1.3 invertebrate GCA_013347855.1_fAngAng1.pri vertebrate +GCA_013358815.1_fEleEle1.pri fish GCA_014108255.1_mRhiFer1.p mammals GCA_014176215.1_mRouAeg1.p mammals GCA_014356525.1_ASM1435652v1 invertebrate GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate GCA_015104395.1_ASM1510439v1 invertebrate GCA_015227675.2_mRatBN7.2 mammals GCA_015227805.2_bHirRus1.pri.v2 birds GCA_015227805.3_bHirRus1.pri.v3 birds GCA_016128335.1_ZJU1.0 birds GCA_016432865.1_AdamAnt mammals GCA_017916325.1_LU_Lmar_1.0 invertebrate GCA_017916335.1_LU_Lori_1.0 invertebrate GCA_017976375.1_bCucCan1.pri birds GCA_017976425.1_fToxJac2.pri fish @@ -259,57 +260,59 @@ GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_028538775.1_mMyoYum1.0.hap1 mammals GCA_028564815.1_mEubGla1.hap2 mammals GCA_028858705.1_bGruAme1.mat birds GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates GCA_029207755.1_bChaFas1.0.hap1 birds GCA_029215685.1_rPitCat1.0.hap2 vertebrate GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri primates GCA_029499605.1_aHylSar1.hap1 vertebrate GCA_029633855.1_fHopMal1.hap1 fish GCA_029633865.1_fLamInc1.hap2 fish GCA_029633875.1_fHopMal1.hap2 fish GCA_030028045.1_mHipAmp2.hap2 mammals +GCA_030028105.1_sMobBir1.hap1 vertebrate GCA_030144855.1_sHypSab1.hap1 vertebrate GCA_030435805.1_mMusLut2.pri mammals GCA_030445055.1_mDasNov1.hap1 mammals GCA_030684315.1_sSteTig4.hap1 vertebrate GCA_030867065.1_rAllMis1 vertebrate GCA_030867095.1_rAllMis1 vertebrate GCA_030936135.1_bGavSte3.hap2 birds GCA_031021105.1_rEryReg1.hap1 vertebrate GCA_035083965.1_klBraLanc5.hap2 invertebrate GCA_035609145.1_aEleCoq1.hap1 vertebrate GCA_036010775.1_bColLiv1.mat birds GCA_036013475.1_bColLiv1.pat.W birds GCA_036013475.2_bColLiv1.pat.W.v2 birds GCA_036169615.1_bHelExo1.hap1 birds GCA_036373705.1_fAmiCal2.hap1 fish GCA_036850765.1_mSacBil1_pri_phased_curated mammals GCA_036850995.1_mSacLep1_pri_phased_curated mammals GCA_036971445.1_sNarBan1.hap1 vertebrate GCA_036971685.1_bPatFas1.hap2 birds GCA_038363095.1_mArtLit.hap1 mammals GCA_039877785.1_fChaTrf1.hap1 fish GCA_040894005.1_aEngPut4.maternal vertebrate GCA_040894355.1_rMyuGeo1.pri.20230808 vertebrate GCA_042242105.1_fPemKlu1.hap1 fish GCA_043159975.1_mMacNem.hap1 primates GCA_044704955.1_sPriJap1.hap1 vertebrate GCA_047511675.1_mMarFla1.hap1 mammals +GCA_048164855.1_mCanLup2.hap1 mammals GCA_900006655.3_Susie3 primates GCA_900094665.2_CAROLI_EIJ_v1.1 mammals GCA_900324465.2_fAnaTes1.2 fish GCA_900634415.1_fCotGob3.1 fish GCA_900634775.1_fGouWil2.1 fish GCA_901343595.1_MONAX5 mammals GCA_901699155.1_bStrTur1.1 birds GCA_901699165.1_bStrTur1.1_alternate_haplotype birds GCA_901709675.1_fSynAcu1.1 fish GCA_902153765.1_bAquChr1.2_alternate_haplotype birds GCA_902459505.1_aGeoSer1.1 vertebrate GCA_902500255.1_fThaAma1.1 fish GCA_902686455.1_mSciVul1.1 mammals GCA_902713425.1_fAciRut3.1_maternal_haplotype fish GCA_902713425.2_fAciRut3.2_maternal_haplotype fish