b6ed6ba4a6456f58fa60a91c04aaef0c36728a1d hiram Wed Apr 9 23:52:39 2025 -0700 VGP update refs #29545 diff --git src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt index 43053f8afc8..ecc34a3e9f7 100644 --- src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt +++ src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt @@ -168,32 +168,32 @@ GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 primates GCA_009762305.1_mZalCal1.pri mammals GCA_009762595.1_rDerCor1.alt vertebrate GCA_009764475.1_sPriPec2.pri vertebrate GCA_009764565.1_rDerCor1.pri vertebrate GCA_009769485.1_bCygOlo1.alt birds GCA_009769545.1_fCycLum1.pri fish GCA_009769625.1_bCygOlo1.pri birds GCA_009806435.2_UM_NZW_1.0 mammals GCA_009819505.1_bCatUst1.alt birds GCA_009819655.1_bSylAtr1.pri birds GCA_009819705.1_fHipHip1.pri fish GCA_009829125.1_fPerMag1.pri fish GCA_009873245.2_mBalMus1.v2 mammals GCA_009914755.4_T2T-CHM13v2.0 primates -GCA_010993605.1_kPetMar1.pri vertebrate GCA_010909765.1_sAmbRad1.pri vertebrate +GCA_010993605.1_kPetMar1.pri vertebrate GCA_011004845.1_fEsoLuc1.pri fish GCA_011064685.1_ZJU_Sfru_1.0 invertebrate GCA_011100535.1_mCalJac1.pat primates GCA_011100555.2_mCalJa1.2.pat.X primates GCA_011100635.1_mTriVul1.pri mammals GCA_011762505.1_mArvNil1.pat.X mammals GCA_011762595.1_mTurTru1.mat.Y mammals GCA_012275295.1_bMelUnd1.mat.Z birds GCA_013339725.1_BIME_Rmic_1.3 invertebrate GCA_013347855.1_fAngAng1.pri vertebrate GCA_014108255.1_mRhiFer1.p mammals GCA_014176215.1_mRouAeg1.p mammals GCA_014356525.1_ASM1435652v1 invertebrate GCA_014839835.1_bDryPub1.pri birds GCA_014905235.2_Bmori_2016v1.0 invertebrate @@ -216,30 +216,31 @@ GCA_019925205.1_ASM1992520v1 invertebrate GCA_020740725.1_bCorHaw1.pri.cur birds GCA_020740795.1_bApuApu2.pri.cur birds GCA_020745735.1_sHemOce1.pat.X.cur. vertebrate GCA_020800215.1_PR-102_v3_p invertebrate GCA_020826845.1_mDicBic1.mat.cur mammals GCA_021462225.2_DD_fGirMul_XY1 fish GCA_021950905.1_HG002.pat.cur.20211005 primates GCA_021951015.1_HG002.mat.cur.20211005 primates GCA_022059095.1_T.mel.1 invertebrate GCA_022577435.1_fEmbJac1.0.p fish GCA_022682395.1_HLdesRot8B mammals GCA_022682495.1_HLdesRot8A mammals GCA_022682495.2_HLdesRot8A.1 mammals GCA_023055355.1_bAgeTri1.0.p birds +GCA_023333525.1_rAspTig1.0.p vertebrate GCA_023343835.1_bLagMut1_primary birds GCA_023634085.1_bFalChe1.pri birds GCA_023634155.1_bFalPer1.pri birds GCA_023637945.1_DD_ASM_B1 birds GCA_023638135.1_bFalBia1.pri birds GCA_025091365.1_ASM2509136v1 invertebrate GCA_025265405.1_mMesDen1_primary_haplotype mammals GCA_025583915.1_AnoSag2.1 vertebrate GCA_026419915.1_bHarHar1_primary_haplotype birds GCA_026419965.1_mKogBre1_haplotype_1 mammals GCA_027172205.1_rPodRaf1.pri vertebrate GCA_027358585.1_fPanHyp1.pri fish GCA_027406575.1_mNycCou1.pri primates GCA_027409825.1_fScoJap1.pri fish GCA_027477595.1_bHaeMex1.pri birds @@ -253,43 +254,49 @@ GCA_028018385.1_mNeoNeb1.pri mammals GCA_028018845.1_bMelGeo1.pri birds GCA_028023285.1_mBalRic1.hap2 mammals GCA_028389875.1_bPtePen1.pri birds GCA_028390025.1_aPseCor3.hap2 vertebrate GCA_028500815.1_bRisTri1.patW.cur.20221130 birds GCA_028538775.1_mMyoYum1.0.hap1 mammals GCA_028564815.1_mEubGla1.hap2 mammals GCA_028858705.1_bGruAme1.mat birds GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt primates GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri primates GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt primates GCA_029207755.1_bChaFas1.0.hap1 birds GCA_029215685.1_rPitCat1.0.hap2 vertebrate GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri primates +GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri primates GCA_029499605.1_aHylSar1.hap1 vertebrate GCA_029633855.1_fHopMal1.hap1 fish GCA_029633865.1_fLamInc1.hap2 fish GCA_029633875.1_fHopMal1.hap2 fish GCA_030028045.1_mHipAmp2.hap2 mammals GCA_030144855.1_sHypSab1.hap1 vertebrate GCA_030435805.1_mMusLut2.pri mammals +GCA_030445055.1_mDasNov1.hap1 mammals GCA_030684315.1_sSteTig4.hap1 vertebrate GCA_030867065.1_rAllMis1 vertebrate GCA_030867095.1_rAllMis1 vertebrate GCA_030936135.1_bGavSte3.hap2 birds GCA_031021105.1_rEryReg1.hap1 vertebrate GCA_035083965.1_klBraLanc5.hap2 invertebrate +GCA_035609145.1_aEleCoq1.hap1 vertebrate +GCA_036010775.1_bColLiv1.mat birds +GCA_036013475.1_bColLiv1.pat.W birds +GCA_036013475.2_bColLiv1.pat.W.v2 birds GCA_036169615.1_bHelExo1.hap1 birds GCA_036373705.1_fAmiCal2.hap1 fish GCA_036850765.1_mSacBil1_pri_phased_curated mammals GCA_036850995.1_mSacLep1_pri_phased_curated mammals GCA_036971445.1_sNarBan1.hap1 vertebrate GCA_036971685.1_bPatFas1.hap2 birds GCA_038363095.1_mArtLit.hap1 mammals GCA_039877785.1_fChaTrf1.hap1 fish GCA_040894005.1_aEngPut4.maternal vertebrate GCA_040894355.1_rMyuGeo1.pri.20230808 vertebrate GCA_042242105.1_fPemKlu1.hap1 fish GCA_043159975.1_mMacNem.hap1 primates GCA_044704955.1_sPriJap1.hap1 vertebrate GCA_047511675.1_mMarFla1.hap1 mammals GCA_900006655.3_Susie3 primates @@ -323,33 +330,35 @@ GCA_905404315.1_ilLepSina1.1 invertebrate GCA_905475465.1_ilPieNapi1.1 invertebrate GCA_910591565.1_ilCydSple1.1 invertebrate GCA_910596095.1_fThuMac1.1 fish GCA_947179515.1_mApoSyl1.1 mammals GCA_947347685.1_fPlePla1.1 fish GCA_947461875.1_bHalAlb1.1 birds GCA_949774975.1_mLagAlb1.1 mammals GCA_949987515.1_mDelDel1.1 mammals GCA_949987535.1_mBalAcu1.1 mammals GCA_950005125.1_mChiNiv1.1 mammals GCA_950295315.1_mEriEur2.1 mammals GCA_958295425.1_fSolSol10.1 fish GCA_963082965.1_fCarCar2.1 fish GCA_963259705.1_mMyoDau2.1 mammals +GCA_963455315.2_mGloMel1.2 mammals GCA_963514075.1_fConCon1.1 fish GCA_964195595.1_bCalBor7.hap1.1 birds GCA_964196065.1_bCalBor7.hap2.1 birds +GCA_964237555.1_mOryCun1.1 mammals GCF_000001405.39_GRCh38.p13 primates GCF_000001405.40_GRCh38.p14 primates GCF_000001635.26_GRCm38.p6 mammals GCF_000001735.3_TAIR10 plants GCF_000002435.1_GL2 invertebrate GCF_000002595.1_v3.0 plants GCF_000002775.4_Pop_tri_v3 plants GCF_000002855.3_ASM285v2 fungi GCF_000002945.1_ASM294v2 fungi GCF_000002995.3_ASM299v2 invertebrate GCF_000004335.2_AilMel_1.0 mammals GCF_000004515.4_Glycine_max_v2.0 plants GCF_000004515.5_Glycine_max_v2.1 plants GCF_000004555.1_ASM455v1 invertebrate GCF_000004665.1_Callithrix_jacchus-3.2 primates @@ -377,33 +386,33 @@ GCF_000264685.3_Panu_3.0 primates GCF_000300575.1_Agabi_varbisH97_2 fungi GCF_000326865.1_Helobdella_robusta_v1.0 invertebrate GCF_000340665.1_C.cajan_V1.0 plants GCF_000341935.1_Ccin1 invertebrate GCF_000344595.1_CheMyd_1.0 vertebrate GCF_000364345.1_Macaca_fascicularis_5.0 primates GCF_000365465.2_Ptep_2.0 invertebrate GCF_000442215.1_Lipotes_vexillifer_v1 mammals GCF_000457365.1_ASM45736v1 invertebrate GCF_000471905.2_AMTR1.0 plants GCF_000495115.1_PopEup_1.0 plants GCF_000503995.1_CerSol_1.0 invertebrate GCF_000507465.1_Kwon_mang_CBS8507_V2 fungi GCF_000511025.2_RefBeet-1.2.2 plants -GCF_000512605.1_Cryp_pinu_CBS10737_V1 fungi GCF_000512565.1_Cryp_deje_CBS10117_V1 fungi GCF_000512585.1_Cryp_best_CBS10118_V1 fungi +GCF_000512605.1_Cryp_pinu_CBS10737_V1 fungi GCF_000687205.1_ASM68720v1 birds GCF_000690535.1_ASM69053v1 birds GCF_000691845.1_ASM69184v1 birds GCF_000695815.1_ASM69581v1 birds GCF_000697945.2_Focc_2.1 invertebrate GCF_000699005.1_ASM69900v1 birds GCF_000699245.1_ASM69924v1 birds GCF_000699445.2_SchHae_2.0 invertebrate GCF_000700745.1_ASM70074v1 birds GCF_000709325.1_ASM70932v1 birds GCF_000709365.1_ASM70936v1 birds GCF_000738735.2_ASM73873v2 birds GCF_000738735.5_ASM73873v5 birds GCF_000747805.1_ChaPel_1.0 birds GCF_000764305.1_Hazt_2.0 invertebrate @@ -540,22 +549,25 @@ GCF_900324465.1_fAnaTes1.1 fish GCF_900324465.2_fAnaTes1.2 fish GCF_900324485.1_fMasArm1.1 fish GCF_900496995.1_bAquChr1.2 birds GCF_900634625.1_fParRan2.1 fish GCF_900634775.1_fGouWil2.1 fish GCF_900634795.2_fBetSpl5.2 fish GCF_900634795.3_fBetSpl5.3 fish GCF_900700375.1_fDenClu1.1 fish GCF_900700415.1_Ch_v2.0.2 fish GCF_900747795.1_fErpCal1.1 fish GCF_900880675.1_fSpaAur1.1 fish GCF_900963305.1_fEcheNa1.1 fish GCF_901001135.1_aRhiBiv1.1 vertebrate GCF_901001165.1_fSalTru1.1 fish +GCF_901765095.1_aMicUni1.1 vertebrate GCF_902150015.1_genome_assembly_l500 birds GCF_902459505.1_aGeoSer1.1 vertebrate GCF_902713615.1_sScyCan1.1 vertebrate GCF_902827115.1_fPseGeo1.1 fish GCF_903992535.1_mArvAmp1.1 mammals GCF_922984935.1_mMelMel3.1_paternal_haplotype mammals +GCF_929443795.1_bAccGen1.1 birds GCF_932274485.1_xgPatVulg1.1 invertebrate +GCF_963455315.1_mGloMel1.1 mammals