74e53377949096d1ea6f3d78ec59b1914f1373d8
hiram
  Tue May 20 14:58:35 2025 -0700
note about trackDb files and beta and public release control refs #34917

diff --git src/hg/makeDb/doc/tiberius.txt src/hg/makeDb/doc/tiberius.txt
index bf670c6ca92..e36b2884e4e 100644
--- src/hg/makeDb/doc/tiberius.txt
+++ src/hg/makeDb/doc/tiberius.txt
@@ -36,30 +36,35 @@
 cat << '__EOF__' > 2025-02-01/Tiberius.html
 track Tiberius
 bigDataUrl contrib/tiberius/tiberius.bigGenePred.bb
 shortLabel Tiberius genes
 longLabel Tiberius ab initio gene prediction
 type bigGenePred
 visibility pack
 color 0,102,204
 type bigGenePred
 html contrib/tiberius/Tiberius.html
 group genes
 dataVersion Tiberius version 2025-01-07
 baseColorDefault genomicCodons
 __EOF__
 
+### And these two files are checked into the source tree in:
+
+    makeDb/trackDb/contrib/tiberius/Tiberius.html
+    makeDb/trackDb/contrib/tiberius/tiverius.trackDb.txt
+
 #############################################################################
 ### identify corresponding assemblies
 #############################################################################
 
 find ./2025-02-01 -type f | grep '/bb/' | awk -F$'/' '{print $NF}' \
    | sed -e 's/.bb//;' | sort -u > tiberius.2025-02-01.accession.list
 
 grep -F -f tiberius.2025-02-01.accession.list \
    $HOME/kent/src/hg/makeDb/doc/asmHubs/master.run.list \
      | cut -d' ' -f2 | sort -u > to.link.list
 
 ### looks like 701 of them match:
 
 wc -l tiberius.2025-02-01.accession.list to.link.list
  1317 tiberius.2025-02-01.accession.list
@@ -190,30 +195,49 @@
   grep check test.down.log | tail -3
   printf "#### done with ${clade}\n"
 }
 
 for C in primates plants invertebrate legacy \
  birds fish fungi mammals vertebrate viral bacteria
 do
   runOne "${C}" &
 done
 
 printf "waiting . . .\n"
 wait
 printf ". . . exit\n"
 exit $?
 
+#############################################################################
+### beta and public release control
+#############################################################################
+
+### the release of this track is controlled by two files in trackDb:
+
+   makeDb/trackDb/betaGenArk.txt
+   makeDb/trackDb/publicGenArk.txt
+
+### cat publicGenArk.txt betaGenArk.txt
+# the listing in this file triggers the building of the public.hub.txt
+# file in the genark system.  Any contrib project listed here will be included
+# contrib track name: tracks found in <buildDir>/contrib/<thisName>/
+tiberius
+# the listing in this file triggers the building of the beta.hub.txt
+# file in the genark system.  Any contrib project listed here will be included
+# contrib track name: tracks found in <buildDir>/contrib/<thisName>/
+tiberius
+
 #############################################################################
 ### the daily cron jobs will correctly get all the files out to our
 ### mirror sites into the /gbdb/genark/ hierarchy
 #############################################################################
 
 ### current cron job is in Hiram's hgwdev account, this should be moved
 ### to the 'otto' user.
 
 # push out the /gbdb/hubs/GC[AF]/ hierarchy to:
 03 01 * * * /hive/data/inside/genArk/pushRR.sh
 
 ### on the Asia node, it is a pull script in the qateam account:
 #  pull down the /gbdb/hubs/GC[AF]/ files from hgwdev daily
 02 16 * * * ~/cronScripts/pullHgwdev.sh