c91de9787fcb7f202a9e294d4e9e8734938d5389
hiram
  Wed Jun 3 10:52:32 2026 -0700
do not add the toga V1 tracks when the TOGAv2 is available refs #35776

diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh
index 0377c7c16d8..ebec1439ab9 100755
--- src/hg/utils/automation/asmHubTrackDb.sh
+++ src/hg/utils/automation/asmHubTrackDb.sh
@@ -1100,31 +1100,32 @@
 urlLabel Click here to show this guide on Crispor.org, with expression oligos, validation primers and more
 tableBrowser noGenome
 noGenomeReason This track is too big for whole-genome Table Browser access, it would lead to a timeout in your internet browser. Please see the CRISPR Track documentation, the section \"Data Access\", for bulk-download options. Contact us if you encounter difficulties with downloading the data.
 denseCoverage 0
 scoreFilterMax 100
 " "${asmId}" "${asmId}" "${asmId}"
 
 $scriptDir/asmHubCrisprAll.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/trackData > $buildDir/html/$asmId.crisprAll.html
 
 fi	#	if [ -s ${buildDir}/trackData/crisprAll/crispr.bb ]
 
 # TOGA track if exists
 # build directory can be either TOGAvGalGal6v1 or TOGAvHg38v1
 
 export tg=`ls -d ${buildDir}/trackData/TOGAv* 2> /dev/null | wc -l`
-if [ "${tg}" -gt 0 ]; then
+export tgV2=`ls -d ${buildDir}/contrib/TOGAv2/TOGAv2.html 2> /dev/null | wc -l`
+if [[ "${tg}" -gt 0 && "${tgV2}" -eq 0 ]]; then
   rm -f $buildDir/bbi/HLTOGAannotVs*.*
   rm -f $buildDir/ixIxx/HLTOGAannotVs*.*
   tData=`ls -d $buildDir/trackData/TOGAv* | sed -e 's#.*/trackData#trackData#;'`
   fBase=`ls $buildDir/trackData/TOGAv*/HLTOGAannotVs*.bb | sed -e 's#.*/##; s/.bb//;'`
   # there is a bug in the source files that have galGal6 when they should
   # be GalGal6
   FBase=`echo $fBase | sed -e 's#galGal6#GalGal6#;'`
   ln -s ../$tData/$fBase.bb $buildDir/bbi/$FBase.bb
   ln -s ../$tData/$fBase.ix $buildDir/ixIxx/$FBase.ix
   ln -s ../$tData/$fBase.ixx $buildDir/ixIxx/$FBase.ixx
   if [ -d ${buildDir}/trackData/TOGAvHg38v1 ]; then
 printf "track HLTOGAannotvHg38v1
 bigDataUrl bbi/HLTOGAannotVsHg38v1.bb
 shortLabel TOGA vs. hg38
 longLabel TOGA annotations using human/hg38 as reference