54bafa77fa2deb567b4e8b1dc7bee6f5e686eb16 hiram Mon Nov 24 12:09:41 2025 -0800 incorrect name on the dev.today.liftOverList they were not going out refs #35575 diff --git src/hg/utils/otto/genArk/devList.sh src/hg/utils/otto/genArk/devList.sh index 0d45c217dea..e48b362a007 100755 --- src/hg/utils/otto/genArk/devList.sh +++ src/hg/utils/otto/genArk/devList.sh @@ -1,69 +1,69 @@ #!/bin/bash ############################################################################# ### This source is from the source tree: ### ~/kent/src/hg/utils/otto/genArk/devList.sh ### do *not* edit this in the otto directory /hive/data/inside/GenArk/pushRR/ ### where this is used. ### Running as the otto cron job: ### 58 20 * * * /hive/data/inside/GenArk/pushRR/devList.sh ### ### This script takes about 90 minutes to run as of 2025-07-30 ### ############################################################################# set -beEu -o pipefail export DS=`date "+%F"` export Y=`date "+%Y"` export M=`date "+%m"` export machName=`uname -n | cut -d'.' -f1` export fileOut="gbdbGenArk.${machName}.${DS}" export statList="gbdbGenArkStat.${machName}.${DS}" export quickLiftStat="gbdbQuickLiftStat.${machName}.${DS}" export liftOverStat="gbdbLiftOverStat.${machName}.${DS}" find -L /gbdb/genark/GCA /gbdb/genark/GCF -type d | sort \ | gzip -c > /dev/shm/${fileOut}.gz mkdir -p /hive/data/inside/GenArk/pushRR/logs/${Y}/${M} cp -p /dev/shm/${fileOut}.gz /hive/data/inside/GenArk/pushRR/logs/${Y}/${M}/ rm -f /dev/shm/${fileOut}.gz cd /gbdb/genark find -L ./GCA ./GCF -type f | sed -e 's#^./##;' | sort | gzip -c \ > /dev/shm/gbdbGenark.fl.gz zcat /dev/shm/gbdbGenark.fl.gz | xargs stat -L --printf="%Y\t%n\n" \ | gzip -c > /dev/shm/${statList}.gz cp -p /dev/shm/${statList}.gz /hive/data/inside/GenArk/pushRR/logs/${Y}/${M}/ cp -p /dev/shm/${statList}.gz /hive/data/inside/GenArk/pushRR/dev.todayList.gz rm -f /dev/shm/gbdbGenark.fl.gz /dev/shm/${statList}.gz cd /gbdb ls -d */quickLift | while read Q do find -L ./${Q} -type f done | sed -e 's#^./##;' | sort | gzip -c > /dev/shm/gbdbQuickLift.fl.gz zcat /dev/shm/gbdbQuickLift.fl.gz | xargs stat -L --printf="%Y\t%n\n" \ | gzip -c > /dev/shm/${quickLiftStat}.gz cp -p /dev/shm/${quickLiftStat}.gz /hive/data/inside/GenArk/pushRR/logs/${Y}/${M}/ cp -p /dev/shm/${quickLiftStat}.gz /hive/data/inside/GenArk/pushRR/dev.today.quickLiftList.gz rm -f /dev/shm/gbdbQuickLift.fl.gz /dev/shm/${quickLiftStat}.gz ls -d */liftOver | while read Q do find -L ./${Q} -type f done | sed -e 's#^./##;' | sort | gzip -c > /dev/shm/gbdbLiftOver.fl.gz zcat /dev/shm/gbdbLiftOver.fl.gz | xargs stat -L --printf="%Y\t%n\n" \ | gzip -c > /dev/shm/${liftOverStat}.gz cp -p /dev/shm/${liftOverStat}.gz /hive/data/inside/GenArk/pushRR/logs/${Y}/${M}/ -cp -p /dev/shm/${liftOverStat}.gz /hive/data/inside/GenArk/pushRR/dev.today.quickLiftList.gz +cp -p /dev/shm/${liftOverStat}.gz /hive/data/inside/GenArk/pushRR/dev.today.liftOverList.gz rm -f /dev/shm/gbdbLiftOver.fl.gz /dev/shm/${liftOverStat}.gz