d2ba607d9473e0ab7983cd09fe44652db733ffee
jbirgmei
  Thu Jul 3 02:04:42 2025 -0700
Changed otto crontab to use doUpdate for pubtatorDbSnp instead of BUILD

refs #36011

diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab
index 45f08c983c4..a2695d31bc5 100644
--- src/hg/utils/otto/otto.crontab
+++ src/hg/utils/otto/otto.crontab
@@ -131,20 +131,20 @@
 HGDB_CONF=/cluster/home/otto/.hg.conf.beta
 15 05 * * *  /hive/data/outside/otto/omim/omimUploadWrapper.sh
 
 MAILTO=cells@ucsc.edu
 # Cell Browser news sec update by Matt/Brittney Sept 2022
 04 12 * * 1-5 ~bwick/miniconda3/bin/python3.8 ~bwick/cellBrowser/ucsc/updateNewsSec -r
 
 # Malacards update. Not done monthly, but running monthly anyways, as they don't have a fixed schedule
 
 #Format: Minute - Hour - DayofMonth month Day-of-week
 MAILTO=mhaeussl@ucsc.edu
 04 04 20 * * /hive/data/outside/otto/malacards/update.sh
 
 MAILTO=jbirgmei@ucsc.edu
 # PubTator3 dbSNP track update
-28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./BUILD'
+28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./doUpdate.sh'
 
 MAILTO=cvaske@ucsc.edu
 # CIViC update. Releases are typically on the 1st of the month
 12 12 2 * * /hive/data/outside/otto/civic/doCivicUpdate.sh