c54a0adcdae338ac8e9ae230eb2da1f8d7e65207
jbirgmei
  Wed May 21 02:49:12 2025 -0700
Adding varaico make docs

diff --git src/hg/makeDb/doc/hg38/varaico.txt src/hg/makeDb/doc/hg38/varaico.txt
new file mode 100644
index 00000000000..0a66f6e5814
--- /dev/null
+++ src/hg/makeDb/doc/hg38/varaico.txt
@@ -0,0 +1,10 @@
+# May 21 2025 - Johannes
+# have a look at this config file and edit paths/API keys if necessary:
+export AMELIE2_CONFIG_JSON=/hive/users/jbirgmei/amelie2/src/scripts/config.json
+
+# then run the pipeline to create hg19 and hg38 bigbeds:
+/cluster/home/jbirgmei/opt_rocky9/miniconda3/envs/amelie2/bin/amelie2 workflow final_out --partition hg19,hg38
+
+# copy bigbeds:
+cp /hive/users/jbirgmei/amelie2/data/out/full/hg19/normalized_variants.hg19.bb /gbdb/hg19/bbi/varaico.bb
+cp /hive/users/jbirgmei/amelie2/data/out/full/hg38/normalized_variants.hg19.bb /gbdb/hg38/bbi/varaico.bb