1bb611971263cd3ea1b73ef3e1b1f5eaa28d0a5d
jcasper
  Sun Jul 27 01:11:19 2025 -0700
Installing updated hg.conf files from UCSC servers

diff --git confs/hgwbeta.hg.conf confs/hgwbeta.hg.conf
index e6a36b7956e..ba8589d5664 100644
--- confs/hgwbeta.hg.conf
+++ confs/hgwbeta.hg.conf
@@ -197,31 +197,31 @@
 #surveyLabel= Request onsite workshops
 
 #Outputs every single SQL call in the error logs
 # JKSQL_TRACE=on
 
 # Allow the URL: /cgi-bin/hubApi to produce a WEB page
 # otherwise, it redirects to the help page
 hubApi.allowHtml=on
 
 # Setting speeds up the browser by caching large trackDb (such as big hubs)
 cacheTrackDbDir=/dev/shm/trackDbCache
 
 # Enable hgPhyloPlace:
 hgPhyloPlaceEnabled=on
 nextstrainHost=https://nextstrain.org
-microbeTraceHost=https://cdcgov.github.io
+microbeTraceHost=https://microbetrace.cdc.gov
 hgPhyloPlaceServerDir=/userdata/hgPhyloPlace/hgwbeta
 
 # Recommended track sets refs #25601
 browser.recTrackSets=on
 
 # Enable FreeType fonts
 freeType=on
 #freeTypeDir=/usr/share/fonts/default/Type1
 
 # Database specific settings
 wuhCor1_TopLink=http://genome.ucsc.edu/goldenPath/help/covidBrowserIntro.html
 wuhCor1_TopLinkLabel=Quick start guide
 
 # Related tracks
 db.relatedTrack=relatedTrack
@@ -283,15 +283,20 @@
 hubSpaceUrl=https://hgwbeta.soe.ucsc.edu/hubspace
 # let users create an api key on the hub development tab to use hubSpace from the command line
 showHubApiKey=true
 
 # Increases the number of items that can be queried from a BAM file
 BAMMaxItems=30000
 
 # Adding new more aggresive bot delay #35729
 newBotDelay=on
 
 # new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results.
 autoBlatBigPsl=on
 
 # BLAT shows locus name of the match #35993
 blatShowLocus=off
+
+
+# use hgcentral.genarkOrk to allow some genark hubs
+# to appear in assembly dropdowns in hgConvert
+genarkLiftOver=on