96bae9c033a0e3043f88456daf9d3b6d238cb09e jcasper Sun Jul 6 01:11:14 2025 -0700 Installing updated hg.conf files from UCSC servers diff --git confs/hgwbeta.hg.conf confs/hgwbeta.hg.conf index 914f0e262f0..e68ca1c0d6a 100644 --- confs/hgwbeta.hg.conf +++ confs/hgwbeta.hg.conf @@ -118,31 +118,31 @@ # If you turn the flag off, it reverts to the old validator #newCustomTrackValidate=on # No Sql Injection settings # values for level are ignore, logOnly, warn, abort noSqlInj.level=abort # values for dumpStack are on, off noSqlInj.dumpStack=on # line added to turn off the new hash-enhanced hgsid/uid values #browser.sessionKey=off # HTTPS Certificate Check Settings are: abort warn log none # currently log is the default #httpsCertCheck=none -httpsCertCheck=warn +httpsCertCheck=log # domains to whitelist, skip cert checking, space-separated list httpsCertCheckDomainExceptions= # useful for testing, presence of "noHardwiredExceptions" in the list here # turns off the hardwired whitelist exceptions in https.c #httpsCertCheckDomainExceptions=noHardwiredExceptions # with wildcard for testing: #httpsCertCheckDomainExceptions=noHardwiredExceptions *.upf.edu *.igh.cnrs.fr *.med.umich.edu # Apply a maximum to the size of MAF and VCF custom tracks supplied # directly (instead of via bigURLs). #customTracks.maxBytes=52428800 # Log visible tracks to error_log trackLog=on @@ -258,37 +258,40 @@ # so we won't check at start up trustTrackDb=on # limit memory to 20G maxMem=21474836480 # Increases the number of items that can be queries from a bigBed file bigBedMaxItems=100000 # Enables the grouping feature for track hubs trackHubsCanAddGroups=on # Enables the pop-up when clicking items option on the configure page canDoHgcInPopUp=true -# Show errors instead of triggering error 500 pages -showEarlyErrors=off - # hubSpace related settings: # show the hubSpace UI storeUserFiles=true # location of files stored by tusd tusdDataDir=/tusd/beta userDataDir=/tusd/beta # The tusd endpoint files are uploaded to hubSpaceTusdEndpoint=https://hgwbeta-hubspace.gi.ucsc.edu/files # The web accessible location after tusd moves the files # when an upload is completed hubSpaceUrl=https://hgwbeta.soe.ucsc.edu/hubspace # let users create an api key on the hub development tab to use hubSpace from the command line showHubApiKey=true # Increases the number of items that can be queried from a BAM file BAMMaxItems=30000 # Adding new more aggresive bot delay #35729 newBotDelay=on + +# new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results. +autoBlatBigPsl=on + +# BLAT shows locus name of the match #35993 +blatShowLocus=on