1bb611971263cd3ea1b73ef3e1b1f5eaa28d0a5d jcasper Sun Jul 27 01:11:19 2025 -0700 Installing updated hg.conf files from UCSC servers diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf index 4a8df0a1143..2017d7210fc 100644 --- confs/hgwdev.hg.conf +++ confs/hgwdev.hg.conf @@ -361,31 +361,31 @@ # Setting speeds up the browser by caching large trackDb (such as big hubs) #cacheTrackDbDir=../trash/trackDbCache cacheTrackDbDir=/dev/shm/trackDbCache #cacheTrackDbDir= # Recommended track sets refs #25601 browser.recTrackSets=on #browser.recTrackSetsDetectChange=on ### Testing mouse over display function 2020-10 - Hiram #mouseOverEnabled=on # Enable hgPhyloPlace: hgPhyloPlaceEnabled=on nextstrainHost=https://nextstrain.org -microbeTraceHost=https://cdcgov.github.io +microbeTraceHost=https://microbetrace.cdc.gov hgPhyloPlaceServerDir=/data/apache/userdata/hgPhyloPlace/genome-test # Enable svg based bar charts #svgBarChart=on # Move multi-region button above image #multiRegionButtonTop=on # Related tracks db.relatedTrack=relatedTrack # prefix to genark hubs ### genarkHubPrefix=https://hgdownload.soe.ucsc.edu/hubs ### trying hosting from /gbdb/genark - 2025-02-06 - Hiram genarkHubPrefix=/gbdb/genark @@ -469,16 +469,16 @@ # Increases the number of items that can be queried from a BAM file BAMMaxItems=30000 # new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results. autoBlatBigPsl=on # you can also comment it out and test that it behaves the old way as expected. # BLAT shows locus name of the match #35993 blatShowLocus=on #blatShowLocus=off # use hgcentral.genarkOrk to allow some genark hubs # to appear in assembly dropdowns in hgConvert genarkLiftOver=on - +greyBarIcons=on