96bae9c033a0e3043f88456daf9d3b6d238cb09e jcasper Sun Jul 6 01:11:14 2025 -0700 Installing updated hg.conf files from UCSC servers diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf index 76543c52a75..bd03da20436 100644 --- confs/hgwdev.hg.conf +++ confs/hgwdev.hg.conf @@ -300,31 +300,31 @@ # #tell hdb.c code that this is our development server test.dev=on # No Sql Injection settings # values for level are ignore, logOnly, warn, abort noSqlInj.level=abort # values for dumpStack are on, off noSqlInj.dumpStack=on # HTTPS Certificate Check Settings are: abort warn log none # currently log is the default #httpsCertCheck=none -httpsCertCheck=warn +httpsCertCheck=log # domains to whitelist, skip cert checking, space-separated list httpsCertCheckDomainExceptions= # useful for testing, presence of "noHardwiredExceptions" in the list here # turns off the hardwired whitelist exceptions in https.c #httpsCertCheckDomainExceptions=noHardwiredExceptions # with wildcard for testing: #httpsCertCheckDomainExceptions=noHardwiredExceptions *.upf.edu *.igh.cnrs.fr *.med.umich.edu # Log visible tracks to error_log trackLog=on # location of CRAM reference sequences cramRef=../userdata/cramCache @@ -460,15 +460,24 @@ browser.quickLift=on quickLift.lengthLimit=100000 quickLift.insColor=127,0,0,64 quickLift.delColor=0,0,127,64 quickLift.doubleColor=0,127,0,64 newBotDelay=on # Increases the number of items that can be queried from a BAM file BAMMaxItems=30000 # new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results. autoBlatBigPsl=on # you can also comment it out and test that it behaves the old way as expected. + +# BLAT shows locus name of the match #35993 +blatShowLocus=on + +# use hgcentral.genarkOrk to allow some genark hubs +# to appear in assembly dropdowns in hgConvert +genarkLiftOver=on + +