1bb611971263cd3ea1b73ef3e1b1f5eaa28d0a5d jcasper Sun Jul 27 01:11:19 2025 -0700 Installing updated hg.conf files from UCSC servers diff --git confs/rr.hg.conf confs/rr.hg.conf index 9a8019a96c4..5b4bd264126 100644 --- confs/rr.hg.conf +++ confs/rr.hg.conf @@ -131,31 +131,31 @@ sessionDataDir=/userdata/sessions/rr sessionDataDirOld=/userdata # Name prefix of 31 separate databases (one for each day of month, on same # server as customTrash, using customTracks.* profile) for custom track # database tables that belong to users' saved sessions, analogous to # sessionDataDir setting for saved session files. # The databases must be named as this prefix followed by {01, 02, 03, ... 31}. # For example, if the value is "customData" then the databases are named # customData01, customData02, ... customData31. sessionDataDbPrefix=customData # Enable hgPhyloPlace: hgPhyloPlaceEnabled=on nextstrainHost=https://nextstrain.org -microbeTraceHost=https://cdcgov.github.io +microbeTraceHost=https://microbetrace.cdc.gov hgPhyloPlaceServerDir=/userdata/hgPhyloPlace/rr # Recommended track sets refs #25601 browser.recTrackSets=on # Enable FreeType fonts freeType=on freeTypeDir=../htdocs/urw-fonts # prefix to genark hubs genarkHubPrefix=/gbdb/genark # Database specific settings wuhCor1_TopLink=http://genome.ucsc.edu/goldenPath/help/covidBrowserIntro.html wuhCor1_TopLinkLabel=Quick start guide @@ -226,21 +226,18 @@ BAMMaxItems=30000 # hubSpace related settings: # show the hubSpace UI #storeUserFiles=true # location of files stored by tusd #tusdDataDir=/data/tusd/data/ # The tusd endpoint files are uploaded to #hubSpaceTusdEndpoint=https://hubspace.soe.ucsc.edu/files # The web accessible location after tusd moves the files # when an upload is completed #hubSpaceUrl=https://hubspace.soe.ucsc.edu/hubspace # let users create an api key on the hub development tab to use hubSpace from the command line #showHubApiKey=true -# new flag for testing rm32751 turn on automatic creation of custom tracks from hgBlat results. -autoBlatBigPsl=on - # BLAT shows locus name of the match #35993 blatShowLocus=off