75711ca6eda92d718879304fde2251bcdedd8534
jcasper
  Sat Apr 12 17:18:29 2025 -0700
V48lift37 knownGene trackDb, refs #35187

diff --git src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra
new file mode 100644
index 00000000000..4ee3e961265
--- /dev/null
+++ src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra
@@ -0,0 +1,46 @@
+track knownGene
+table knownGene
+shortLabel GENCODE V48lift37
+longLabel GENCODE V48lift37
+# parent knownGeneArchive
+priority 1
+#priority 5
+visibility pack
+type bigGenePred knownGenePep knownGeneMrna
+bigDataUrl /gbdb/hg19/gencode/gencodeV48lift37.bb
+downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/genes/hg19.knownGene.gtf.gz
+baseColorDefault genomicCodons
+group genes
+isGencode3 on
+directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
+labelFields geneName,name,geneName2,name2
+defaultLabelFields geneName
+itemRgb on
+#externalDb knownGeneV48lift37
+maxItems 50000
+html knownGeneV48lift37
+searchIndex name
+idXref kgAlias kgID alias
+intronGap 12
+defaultLinkedTables kgXref
+squishyPackPoint 1
+squishyPackField rank
+squishyPackLabel Number of transcripts shown at full height (ranked by <A href="#squishyPack">GENCODE transcript ranking</A>)
+
+searchName knownGeneAcc
+searchTable knownGene
+searchMethod exact
+searchType knownGene
+shortCircuit 1
+semiShortCircuit 1
+termRegex ENST[0-9._]+
+searchPriority 9
+
+searchName knownGeneFast
+searchTable knownGene
+searchType knownGeneFast
+shortCircuit 1
+searchPriority 1001
+searchTrix /gbdb/hg19/knownGeneFastV48lift37.ix
+doPage 1
+