36c22bace06f07f8d4f59ef8a18659e926f9d410
jcasper
  Thu Apr 10 10:30:30 2025 -0700
Gencode V48 knownGene trackDb

diff --git src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
index 2819ba02dd1..ae7aa743fe9 100644
--- src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
+++ src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
@@ -176,15 +176,45 @@
     isGencode3 on
     directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
     labelFields geneName,name,geneName2,name2
     defaultLabelFields geneName
     itemRgb on
     externalDb knownGeneV46
     maxItems 50000
     html knownGeneV46
     searchIndex name
     idXref kgAlias kgID alias
     intronGap 12
     defaultLinkedTables kgXref
     squishyPackPoint 1
     squishyPackField rank
     squishyPackLabel Number of transcripts shown at full height (ranked by <A href="#squishyPack">GENCODE transcript ranking</A>)
+
+    track knownGeneV47
+    release alpha
+    #table knownGene
+    shortLabel GENCODE V47
+    longLabel GENCODE V47
+    parent knownGeneArchive
+    priority 1.9
+    visibility pack
+    type bigGenePred knownGenePep knownGeneMrna
+    bigDataUrl /gbdb/hg38/gencode/gencodeV47.bb
+    #downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
+    baseColorDefault genomicCodons
+    group genes
+    isGencode3 on
+    directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
+    labelFields geneName,name,geneName2,name2
+    defaultLabelFields geneName
+    itemRgb on
+    externalDb knownGeneV47
+    maxItems 50000
+    html knownGeneV47
+    searchIndex name
+    idXref kgAlias kgID alias
+    intronGap 12
+    defaultLinkedTables kgXref
+    squishyPackPoint 1
+    squishyPackField rank
+    squishyPackLabel Number of transcripts shown at full height (ranked by <A href="#squishyPack">GENCODE transcript ranking</A>)
+