028f8f08e2ce12dfee11e4e49464fbfb17929318 jnavarr5 Wed May 21 16:45:04 2025 -0700 Adding a link to the Varaico website, refs #34595 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index ae7dc5975e4..d595f377d81 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -66,31 +66,32 @@ <a name="052125"></a> <h2>May 21, 2025 Varaico variants track available for human (hg38 & hg19)</h2> <p> We are happy to announce the release of the Varaico variants track for human assemblies <a href="/cgi-bin/hgTrackUi?db=hg38&g=varaico" target="_blank">hg38/GRCh38</a> and <a href="/cgi-bin/hgTrackUi?db=hg19&g=varaico" target="_blank">hg19/GRCh37</a>. Varaico stands for "<b>Va</b>riation <b>R</b>esearch <b>A</b>dvancing <b>I</b>nsight in <b>C</b>omplex <b>O</b>rganisms". Varaico was created using literature mining in a fashion similar to AVADA. </p> <p> Varaico variants are generated by an automated process that extracts purely factual information from scientific papers about genes (by matching strings against gene names) and HGVS variant descriptions (using regular expressions). Varaico aims to reduce false positive gene and variant mentions, and aims to link them together appropriately, but nonetheless, many variants displayed are not mapped to -the genomic position intended by the authors.</p> +the genomic position intended by the authors. Visit the +<a href="https://varaico.com/" target="_blank">Varaico website</a> for more details.</p> <p> Mouse-over the variants to show the gene, variant, latest author/year/title, number of publications mentioning the variant, and variant effect. Varaico variants may or may not be disease-causing.</p> <div class="text-center"> <img src="../images/newsArchImages/Varaico.png" width="80%"> <p class="gbsCaption"> <em>Mouse-over is shown for the orange item (BRCA1 c.4136_4137del).</em> </p> </div> <p> We would like to thank Johannes Birgmeier for generating and making the Varaico data available. We would also like to thank Maximilian Haeussler and Jairo Navarro Gonzalez for creating and releasing these tracks. </p>