e68cc6315fa92edde16a3e27015a15cb94290440 jnavarr5 Thu May 22 14:34:00 2025 -0700 Adding files that were staged as the otto user, no Redmine. diff --git src/hg/makeDb/trackDb/human/clinvar.ra src/hg/makeDb/trackDb/human/clinvar.ra index 2a6c8323e40..fa19d8208a2 100644 --- src/hg/makeDb/trackDb/human/clinvar.ra +++ src/hg/makeDb/trackDb/human/clinvar.ra @@ -2,31 +2,31 @@ compositeTrack on shortLabel ClinVar Variants longLabel ClinVar Variants group phenDis visibility hide type bed 12 + noParentConfig on itemRgb on urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/" scoreLabel ClinVar Star-Rating (0-4) dataVersion /gbdb/$D/bbi/clinvarAlpha/version.txt track clinvarMain parent clinvar shortLabel ClinVar SNVs - longLabel ClinVar Short Variants < 50bp + longLabel ClinVar Short Nucleotide Variants < 50bp visibility hide group phenDis itemRgb on priority 1 type bigBed 12 + showCfg on # note that you cannot change these values. Old carts will contain them. If you must change these, you'll have to rename # the field, which will reset the cart variables. Or use the cart rewrite mechanism. You can add more values, though filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,RF|risk factor,OT|other,VUS|vus filterType._clinSignCode multiple filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,UNK|unknown filterType._originCode multiple filterLabel._originCode Alelle Origin filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN filterType._allTypeCode multiple