10be0991b45bc01981e68f72a660adbbcc999f77 jnavarr5 Fri Sep 25 15:53:33 2026 -0700 Updating the filter paragraph on the track description page. Updating the defaultLabels since searching for a CpG ID would result in not showing that ID, refs #38112 diff --git src/hg/makeDb/trackDb/human/hg38/epigenCentral.html src/hg/makeDb/trackDb/human/hg38/epigenCentral.html index a54bdabdf9c..89a65131157 100644 --- src/hg/makeDb/trackDb/human/hg38/epigenCentral.html +++ src/hg/makeDb/trackDb/human/hg38/epigenCentral.html @@ -43,34 +43,36 @@ <p> The mouse-over gives the probe ID, how many episignatures cover the site, and the episignature with the largest effect there with its disorder, direction, and delta-beta. </p> <p> Clicking a site opens a page with a table of every episignature at that site, one row each, giving the gene or locus, the disorder, its OMIM entry, the direction, the delta-beta, the adjusted p-value, and the multiple-testing correction that the publishing study used. Studies differ in which correction they applied, so the adjusted p-values in one row are not always directly comparable with those in another. </p> <p> -Three filters are available on the track configuration page. The episignature filter keeps only -sites that are part of <em>all</em> of the selected episignatures, which is the way to find the -CpGs that two or more disorders have in common. The other two keep a site by how many -episignatures cover it and by the direction and size of the strongest change at it. +Four filters are available on the track configuration page. The <b>Episignature</b> filter +keeps only sites that are part of <em>all</em> of the selected episignatures, which is the way +to find the CpGs that two or more disorders have in common. The others keep a site by the +<b>Number of episignatures at this probe</b>, the <b>Direction of methylation change</b>, and the +<b>Absolute delta-beta of the strongest episignature at this probe</b>. The last one also +appears on the Episignatures collection page, where it filters both tracks at once. </p> <h2>Included episignatures</h2> <p> The 24 episignatures in the track, with the number of CpG sites each contributes and the study that published it. Two signatures are listed for Kabuki syndrome, from a 2017 and a 2026 study, and they are kept apart rather than merged. </p> <!-- BEGIN generated by epigenCentralToBed.py --htmlOut, see makeDb/doc/hg38/episignatures.txt --> <table class="stdTbl"> <tr><th>Episignature</th><th>Disorder</th><th>OMIM</th><th>CpG probes</th><th>Reference</th></tr> <tr><td>16pDel</td><td>Autism spectrum</td><td><a href="https://omim.org/entry/611913" target="_blank">611913</a></td><td>106</td><td><a href="https://pubmed.ncbi.nlm.nih.gov/31311581/" target="_blank">Siu 2019</a></td></tr> <tr><td>ANKRD11</td><td>KBG syndrome</td><td><a href="https://omim.org/entry/148050" target="_blank">148050</a></td><td>82</td><td><a href="https://pubmed.ncbi.nlm.nih.gov/36440975/" target="_blank">Awamleh 2023</a></td></tr>