717ce54a6012dedd51b0100c643a7a252a16fabb jnavarr5 Fri Sep 25 17:46:20 2026 -0700 Adding windowingFuction maximum to trackDb and the script that generates the trackDb file. refs #35528 diff --git src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra index 82f681a597b..9cf559679eb 100644 --- src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra +++ src/hg/makeDb/trackDb/human/hg38/transcriptionStart.ra @@ -21,30 +21,31 @@ defaultSortField Cell_line maxCheckboxes 50 noInherit on visibility hide priority 1 track encode4ProCap_A673_procap parent encode4ProCap on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 0,114,178 shortLabel A673 PRO-cap longLabel A673 PRO-cap transcription start sites, plus strand up and minus strand down onlyVisibility full priority 1 track encode4ProCap_A673_procap_pos parent encode4ProCap_A673_procap type bigWig bigDataUrl /gbdb/hg38/encode4ProCap/A673.ENCSR046BCI.pos.bw color 0,114,178 shortLabel A673 PRO-cap + longLabel A673 PRO-cap transcription start sites, plus strand track encode4ProCap_A673_procap_neg @@ -53,30 +54,31 @@ bigDataUrl /gbdb/hg38/encode4ProCap/A673.ENCSR046BCI.neg.bw color 0,114,178 altColor 0,114,178 shortLabel A673 PRO-cap - longLabel A673 PRO-cap transcription start sites, minus strand track encode4ProCap_Caco-2_procap parent encode4ProCap on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 213,94,0 shortLabel Caco-2 PRO-cap longLabel Caco-2 PRO-cap transcription start sites, plus strand up and minus strand down onlyVisibility full priority 2 track encode4ProCap_Caco-2_procap_pos parent encode4ProCap_Caco-2_procap type bigWig bigDataUrl /gbdb/hg38/encode4ProCap/Caco-2.ENCSR100LIJ.pos.bw color 213,94,0 shortLabel Caco-2 PRO-cap + longLabel Caco-2 PRO-cap transcription start sites, plus strand track encode4ProCap_Caco-2_procap_neg @@ -85,30 +87,31 @@ bigDataUrl /gbdb/hg38/encode4ProCap/Caco-2.ENCSR100LIJ.neg.bw color 213,94,0 altColor 213,94,0 shortLabel Caco-2 PRO-cap - longLabel Caco-2 PRO-cap transcription start sites, minus strand track encode4ProCap_Calu3_procap parent encode4ProCap on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 0,158,115 shortLabel Calu3 PRO-cap longLabel Calu3 PRO-cap transcription start sites, plus strand up and minus strand down onlyVisibility full priority 3 track encode4ProCap_Calu3_procap_pos parent encode4ProCap_Calu3_procap type bigWig bigDataUrl /gbdb/hg38/encode4ProCap/Calu3.ENCSR935RNW.pos.bw color 0,158,115 shortLabel Calu3 PRO-cap + longLabel Calu3 PRO-cap transcription start sites, plus strand track encode4ProCap_Calu3_procap_neg @@ -117,30 +120,31 @@ bigDataUrl /gbdb/hg38/encode4ProCap/Calu3.ENCSR935RNW.neg.bw color 0,158,115 altColor 0,158,115 shortLabel Calu3 PRO-cap - longLabel Calu3 PRO-cap transcription start sites, minus strand track encode4ProCap_HUVEC_procap parent encode4ProCap on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 204,121,167 shortLabel HUVEC PRO-cap longLabel HUVEC PRO-cap transcription start sites, plus strand up and minus strand down onlyVisibility full priority 4 track encode4ProCap_HUVEC_procap_pos parent encode4ProCap_HUVEC_procap type bigWig bigDataUrl /gbdb/hg38/encode4ProCap/HUVEC.ENCSR098LLB.pos.bw color 204,121,167 shortLabel HUVEC PRO-cap + longLabel HUVEC PRO-cap transcription start sites, plus strand track encode4ProCap_HUVEC_procap_neg @@ -149,30 +153,31 @@ bigDataUrl /gbdb/hg38/encode4ProCap/HUVEC.ENCSR098LLB.neg.bw color 204,121,167 altColor 204,121,167 shortLabel HUVEC PRO-cap - longLabel HUVEC PRO-cap transcription start sites, minus strand track encode4ProCap_K562_procap parent encode4ProCap on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 230,159,0 shortLabel K562 PRO-cap longLabel K562 PRO-cap transcription start sites, plus strand up and minus strand down onlyVisibility full priority 5 track encode4ProCap_K562_procap_pos parent encode4ProCap_K562_procap type bigWig bigDataUrl /gbdb/hg38/encode4ProCap/K562.ENCSR261KBX.pos.bw color 230,159,0 shortLabel K562 PRO-cap + longLabel K562 PRO-cap transcription start sites, plus strand track encode4ProCap_K562_procap_neg @@ -181,30 +186,31 @@ bigDataUrl /gbdb/hg38/encode4ProCap/K562.ENCSR261KBX.neg.bw color 230,159,0 altColor 230,159,0 shortLabel K562 PRO-cap - longLabel K562 PRO-cap transcription start sites, minus strand track encode4ProCap_MCF10A_procap parent encode4ProCap on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 86,180,233 shortLabel MCF10A PRO-cap longLabel MCF10A PRO-cap transcription start sites, plus strand up and minus strand down onlyVisibility full priority 6 track encode4ProCap_MCF10A_procap_pos parent encode4ProCap_MCF10A_procap type bigWig bigDataUrl /gbdb/hg38/encode4ProCap/MCF10A.ENCSR799DGV.pos.bw color 86,180,233 shortLabel MCF10A PRO-cap + longLabel MCF10A PRO-cap transcription start sites, plus strand track encode4ProCap_MCF10A_procap_neg @@ -230,30 +236,31 @@ defaultSortField Cell_line maxCheckboxes 50 noInherit on visibility hide priority 2 track proCapNet_A673_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 0,114,178 shortLabel A673 Predicted longLabel A673 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 1 track proCapNet_A673_pred_pos parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hg38/proCapNet/pred/A673.proCapNet.pos.bw color 0,114,178 shortLabel A673 Predicted + longLabel A673 ProCapNet predicted PRO-cap, plus strand track proCapNet_A673_pred_neg @@ -263,30 +270,31 @@ color 0,114,178 altColor 0,114,178 negateValues on shortLabel A673 Predicted - longLabel A673 ProCapNet predicted PRO-cap, minus strand track proCapNet_Caco-2_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 213,94,0 shortLabel Caco-2 Predicted longLabel Caco-2 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 2 track proCapNet_Caco-2_pred_pos parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hg38/proCapNet/pred/Caco-2.proCapNet.pos.bw color 213,94,0 shortLabel Caco-2 Predicted + longLabel Caco-2 ProCapNet predicted PRO-cap, plus strand track proCapNet_Caco-2_pred_neg @@ -296,30 +304,31 @@ color 213,94,0 altColor 213,94,0 negateValues on shortLabel Caco-2 Predicted - longLabel Caco-2 ProCapNet predicted PRO-cap, minus strand track proCapNet_Calu3_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 0,158,115 shortLabel Calu3 Predicted longLabel Calu3 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 3 track proCapNet_Calu3_pred_pos parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hg38/proCapNet/pred/Calu3.proCapNet.pos.bw color 0,158,115 shortLabel Calu3 Predicted + longLabel Calu3 ProCapNet predicted PRO-cap, plus strand track proCapNet_Calu3_pred_neg @@ -329,30 +338,31 @@ color 0,158,115 altColor 0,158,115 negateValues on shortLabel Calu3 Predicted - longLabel Calu3 ProCapNet predicted PRO-cap, minus strand track proCapNet_HUVEC_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 204,121,167 shortLabel HUVEC Predicted longLabel HUVEC ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 4 track proCapNet_HUVEC_pred_pos parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hg38/proCapNet/pred/HUVEC.proCapNet.pos.bw color 204,121,167 shortLabel HUVEC Predicted + longLabel HUVEC ProCapNet predicted PRO-cap, plus strand track proCapNet_HUVEC_pred_neg @@ -362,30 +372,31 @@ color 204,121,167 altColor 204,121,167 negateValues on shortLabel HUVEC Predicted - longLabel HUVEC ProCapNet predicted PRO-cap, minus strand track proCapNet_K562_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 230,159,0 shortLabel K562 Predicted longLabel K562 ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 5 track proCapNet_K562_pred_pos parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hg38/proCapNet/pred/K562.proCapNet.pos.bw color 230,159,0 shortLabel K562 Predicted + longLabel K562 ProCapNet predicted PRO-cap, plus strand track proCapNet_K562_pred_neg @@ -395,30 +406,31 @@ color 230,159,0 altColor 230,159,0 negateValues on shortLabel K562 Predicted - longLabel K562 ProCapNet predicted PRO-cap, minus strand track proCapNet_MCF10A_pred parent proCapNet on container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 + windowingFunction maximum color 86,180,233 shortLabel MCF10A Predicted longLabel MCF10A ProCapNet predicted PRO-cap, plus strand up and minus strand down onlyVisibility full priority 6 track proCapNet_MCF10A_pred_pos parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hg38/proCapNet/pred/MCF10A.proCapNet.pos.bw color 86,180,233 shortLabel MCF10A Predicted + longLabel MCF10A ProCapNet predicted PRO-cap, plus strand track proCapNet_MCF10A_pred_neg