356669aaa62e51676e91f81dc268fcd1af1c2dda
jnavarr5
Wed May 21 15:21:28 2025 -0700
Releasing the Varaico tracks for hg38 and hg19, refs #34595
diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index c141e9c0903..3dead0c664b 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -218,31 +218,30 @@
track pubtator
shortLabel PubTator variants
longLabel dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/pubs2/pubtatorDbSnp.bb
noScoreFilter on
exonNumbers off
itemRgb on
parent varsInPubs pack
urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$"
mouseOver $name found in ${numPubmedIds} PubMed articles
html varsInPubs.html
track varaico
- release alpha,beta
shortLabel Varaico Variants
longLabel Varaico Variants extracted from full text publications, titles, and abstracts
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/bbi/varaico.bb
noScoreFilter on
exonNumbers off
# itemRgb on
dataVersion release 1
parent varsInPubs pack
urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $pmidCount
Variant Effect: $variantEffect
html varsInPubs.html
track caseControl