2e591d0d8b7c1f2bd105893e230fdf6a8033beb9 jnavarr5 Wed Mar 11 10:26:19 2026 -0700 Changing the order of the Coverage tracks for gnomAD so v4 appears first on the list, refs #37036 diff --git src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra index 2aeaa5df1a7..a5c9719ecd5 100644 --- src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra +++ src/hg/makeDb/trackDb/human/hg38/gnomadCoverage.ra @@ -1,225 +1,225 @@ track gnomad3Coverage compositeTrack on parent gnomadVariants shortLabel gnomAD v3 Genome Coverage longLabel Genome Aggregation Database (gnomAD) Genome Sample Coverage v3.0.1 group varRep dataVersion Release 3.0.1 visibility full type bigWig -priority 4 +priority 5 maxHeightPixels 100:24:8 track gnomad3MeanCoverage shortLabel Mean Coverage longLabel gnomAD Mean Genome Sample Coverage v3.0.1 parent gnomad3Coverage on color 255,0,0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.mean.bw priority 0.1 autoScale on alwaysZero on track gnomad3MedianCoverage shortLabel Median Coverage longLabel gnomAD Median Genome Sample Coverage v3.0.1 parent gnomad3Coverage off color 0,0,255 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.median.bw priority 0.2 autoScale on alwaysZero on track gnomad31XPercentage shortLabel Sample % > 1X longLabel gnomAD Percentage of Genome Samples with at least 1X Coverage v3.0.1 parent gnomad3Coverage off color 255,0,0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_1.bw priority 1 viewLimits 0:1 track gnomad35XPercentage shortLabel Sample % > 5X longLabel gnomAD Percentage of Genome Samples with at least 5X Coverage v3.0.1 parent gnomad3Coverage off color 225,0,30 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_5.bw priority 2 viewLimits 0:1 track gnomad310XPercentage shortLabel Sample % > 10X longLabel gnomAD Percentage of Genome Samples with at least 10X Coverage v3.0.1 parent gnomad3Coverage off color 195,0,60 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_10.bw priority 3 viewLimits 0:1 track gnomad315XPercentage shortLabel Sample % > 15X longLabel gnomAD Percentage of Genome Samples with at least 15X Coverage v3.0.1 parent gnomad3Coverage off color 165,0,90 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_15.bw priority 4 viewLimits 0:1 track gnomad320XPercentage shortLabel Sample % > 20X longLabel gnomAD Percentage of Genome Samples with at least 20X Coverage v3.0.1 parent gnomad3Coverage off color 135,0,120 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_20.bw priority 5 viewLimits 0:1 track gnomad325XPercentage shortLabel Sample % > 25X longLabel gnomAD Percentage of Genome Samples with at least 25X Coverage v3.0.1 parent gnomad3Coverage off color 105,0,150 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_25.bw priority 6 viewLimits 0:1 track gnomad330XPercentage shortLabel Sample % > 30X longLabel gnomAD Percentage of Genome Samples with at least 30X Coverage v3.0.1 parent gnomad3Coverage off color 75,0,180 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_30.bw priority 7 viewLimits 0:1 track gnomad350XPercentage shortLabel Sample % > 50X longLabel gnomAD Percentage of Genome Samples with at least 50X Coverage v3.0.1 parent gnomad3Coverage off color 45,0,210 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_50.bw priority 8 viewLimits 0:1 track gnomad3100XPercentage shortLabel Sample % > 100X longLabel gnomAD Percentage of Genome Samples with at least 100X Coverage v3.0.1 parent gnomad3Coverage off color 15,0,240 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_100.bw priority 9 viewLimits 0:1 track gnomad4ExomeCoverage compositeTrack on parent gnomadVariants shortLabel gnomAD v4 Exome Coverage longLabel Genome Aggregation Database (gnomAD) Exome Sample Coverage v4.0 group varRep dataVersion Release 4.0 visibility full type bigWig -priority 5 +priority 4 maxHeightPixels 100:24:8 track gnomad4ExomeMeanCoverage shortLabel Mean Coverage longLabel gnomAD Mean Exome Sample Coverage v4.0 parent gnomad4ExomeCoverage on color 255,0,0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.mean.bw priority 0.1 autoScale on alwaysZero on track gnomad4ExomeMedianCoverage shortLabel Median Coverage longLabel gnomAD Median Exome Sample Coverage v4.0 parent gnomad4ExomeCoverage off color 0,0,255 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.median.bw priority 0.2 autoScale on alwaysZero on track gnomad4Exome1XPercentage shortLabel Sample % > 1X longLabel gnomAD Percentage of Exome Samples with at least 1X Coverage v4.0 parent gnomad4ExomeCoverage off color 255,0,0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_1.bw priority 1 viewLimits 0:1 track gnomad4Exome5XPercentage shortLabel Sample % > 5X longLabel gnomAD Percentage of Exome Samples with at least 5X Coverage v4.0 parent gnomad4ExomeCoverage off color 225,0,30 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_5.bw priority 2 viewLimits 0:1 track gnomad4Exome10XPercentage shortLabel Sample % > 10X longLabel gnomAD Percentage of Exome Samples with at least 10X Coverage v4.0 parent gnomad4ExomeCoverage off color 195,0,60 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_10.bw priority 3 viewLimits 0:1 track gnomad4Exome15XPercentage shortLabel Sample % > 15X longLabel gnomAD Percentage of Exome Samples with at least 15X Coverage v4.0 parent gnomad4ExomeCoverage off color 165,0,90 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_15.bw priority 4 viewLimits 0:1 track gnomad4Exome20XPercentage shortLabel Sample % > 20X longLabel gnomAD Percentage of Exome Samples with at least 20X Coverage v4.0 parent gnomad4ExomeCoverage off color 135,0,120 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_20.bw priority 5 viewLimits 0:1 track gnomad4Exome25XPercentage shortLabel Sample % > 25X longLabel gnomAD Percentage of Exome Samples with at least 25X Coverage v4.0 parent gnomad4ExomeCoverage off color 105,0,150 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_25.bw priority 6 viewLimits 0:1 track gnomad4Exome30XPercentage shortLabel Sample % > 30X longLabel gnomAD Percentage of Exome Samples with at least 30X Coverage v4.0 parent gnomad4ExomeCoverage off color 75,0,180 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_30.bw priority 7 viewLimits 0:1 track gnomad4Exome50XPercentage shortLabel Sample % > 50X longLabel gnomAD Percentage of Exome Samples with at least 50X Coverage v4.0 parent gnomad4ExomeCoverage off color 45,0,210 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_50.bw priority 8 viewLimits 0:1 track gnomad4Exome100XPercentage shortLabel Sample % > 100X longLabel gnomAD Percentage of Exome Samples with at least 100X Coverage v4.0 parent gnomad4ExomeCoverage off color 15,0,240 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_100.bw priority 9 viewLimits 0:1