86e7ae6ee58250f38e017cd73cffe8253d3a92bf jnavarr5 Mon May 19 15:05:30 2025 -0700 Adding pennantIcons for the knownGene release, refs #35186 #35187 #35189 diff --git src/hg/makeDb/trackDb/human/hg38/knownGene.ra src/hg/makeDb/trackDb/human/hg38/knownGene.ra index c9de593f762..606602fd1cd 100644 --- src/hg/makeDb/trackDb/human/hg38/knownGene.ra +++ src/hg/makeDb/trackDb/human/hg38/knownGene.ra @@ -1,60 +1,61 @@ track knownGene table knownGene shortLabel GENCODE V48 longLabel GENCODE V48 +pennantIcon Updated red ../goldenPath/newsarch.html#051925 "Released May 19, 2025" #parent knownGeneArchive priority 1 #priority 5 visibility pack type bigGenePred knownGenePep knownGeneMrna bigDataUrl /gbdb/hg38/gencode/gencodeV48.bb downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz baseColorDefault genomicCodons group genes isGencode3 on directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s labelFields geneName,name,geneName2,name2 defaultLabelFields geneName itemRgb on #externalDb knownGeneV48 maxItems 50000 html knownGeneV48 searchIndex name idXref kgAlias kgID alias intronGap 12 defaultLinkedTables kgXref squishyPackPoint 1 squishyPackField rank squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking) searchName knownGeneAcc searchTable knownGene searchMethod exact searchType knownGene shortCircuit 1 semiShortCircuit 1 termRegex ENST[0-9.]+ searchPriority 9 # Note: Planning to remove the Previous track now that we have the Archive track set #track knownGeneOldV45 #shortLabel Old UCSC Genes #longLabel Previous Version of UCSC Genes #group genes #visibility hide #color 82,82,160 #type genePred #hgsid on #oldToNew kgV45ToKgV46 #baseColorUseCds given #baseColorDefault genomicCodons searchName knownGeneFast searchTable knownGene searchType knownGeneFast shortCircuit 1 searchPriority 1001 searchTrix /gbdb/hg38/knownGeneFastV48.ix searchTrixContext on doPage 1