a2469956ad4608f62f39a0564eaba781a71f2f79 jnavarr5 Thu May 22 14:59:35 2025 -0700 Changing the description of the colors for the Varaico track, refs #34595 diff --git src/hg/makeDb/trackDb/human/varsInPubs.html src/hg/makeDb/trackDb/human/varsInPubs.html index 5fb0b7ade14..e6e052ddcac 100644 --- src/hg/makeDb/trackDb/human/varsInPubs.html +++ src/hg/makeDb/trackDb/human/varsInPubs.html @@ -1,31 +1,31 @@ <H2>Description</H2> <p>The tracks that are listed here contain genetic variants and links to scientific publications that mention them.</p> <ul> <li>The <b>Mastermind</b> track was created by Genomenon, a company that analyzes fulltext of publications with their own proprietary software with an unknown false positive rate.</li> <li>The <b><a target="_blank" href="https://varchat.engenome.com/">VarChat</a></b> track was created by enGenome and links to its proprietary software, VarChat, with an unknown false positive rate.</li> <li>The <b>AVADA</b> track was created in the Bejerano lab at Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning methods and was evaluated to have a false positive rate of around 50% in their study.</li> <li>The <b>PubTator rsIDs</b> track was created using <a href="https://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator3/">PubTator 3 data</a>.</li> <li><b>Varaico</b> was created using literature mining in a fashion similar to AVADA. Coloring -is a gradient between blue and orange, and represent the number of publications per variant. See +is a gradient between blue and red, and represent the number of publications per variant. See the <a href="https://varaico.com/">Varaico website</a> for more details.</li> </ul> </p><p> For additional information please click on the hyperlink of the respective track above. <H2>Display conventions</H2> </p><p> By default, each variant is labeled with the nucleotide change. Hover over the feature to see more information, explained on the track details page of the particular track or when clicking onto the feature. </p> <H2>Credits</H2> <p> For data provenance, access and descriptions, please click the documentation via the link above. </p>