198c9b8daecc44fbda6a6494c566c723920f030a
lrnassar
  Wed Mar 11 18:25:21 2026 -0700
Fixing a few hundred clear typos with the help of Claude. Some are less important in code comments, but majority of them are in user-facing places. I manually approved 60%+ of the changes and didn't see any that were an incorrect suggestion, at worst it was potentially uncessesary, like a code comment having cant instead of can't. No RM.

diff --git src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c
index 6aab0f38a7f..3279c595397 100644
--- src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c
+++ src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c
@@ -12,31 +12,31 @@
 
 char *metaDbs[] = {"hg19", "mm9"};
 char *organisms[] = {"human", "mouse"};
 char *metaTable = "metaDb";
 char *expDb = "hgFixed";
 char *expTable = "encodeExp";
 
 /* Command line variables */
 boolean withParent = FALSE;
 boolean maniFields = FALSE;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
-  "encode2Meta - Create meta.txt file. This is a hierarchical .ra file with heirarchy defined\n"
+  "encode2Meta - Create meta.txt file. This is a hierarchical .ra file with hierarchy defined\n"
   "by indentation.  You might think of it as a meta tag tree.  It contains the contents of\n"
   "the hg19 and mm9 metaDb tables and the hgFixed.encodeExp table.\n"
   "usage:\n"
   "   encode2Meta database manifest.tab meta.txt\n"
   "options:\n"
   "   -withParent - if set put a parent tag in each stanza in addition to indentation\n"
   "   -maniFields - includes some fileds normally suppressed because they are also in manifest\n"
   );
 }
 
 /* Command line validation table. */
 static struct optionSpec options[] = {
    {"withParent", OPTION_BOOLEAN},
    {"maniFields", OPTION_BOOLEAN},
    {NULL, 0},